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  5. Zm00001e016284_P001

Zm00001e016284_P001


Description : helicase component eIF4A3 of RNA quality control Exon Junction complex


Gene families : OG0000822 (Archaeplastida) Phylogenetic Tree(s): OG0000822_tree ,
OG_05_0005548 (LandPlants) Phylogenetic Tree(s): OG_05_0005548_tree ,
OG_06_0007007 (SeedPlants) Phylogenetic Tree(s): OG_06_0007007_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e016284_P001
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00036p00181640 evm_27.TU.AmTr_v1... Protein biosynthesis.translation initiation.mRNA... 0.06 Archaeplastida
AT3G13920 TIF4A1, EIF4A1, RH4 eukaryotic translation initiation factor 4A1 0.05 Archaeplastida
Cpa|evm.model.tig00001339.22 No alias RNA processing.RNA quality control Exon Junction complex... 0.01 Archaeplastida
Cre03.g199647 No alias RNA processing.RNA quality control Exon Junction complex... 0.02 Archaeplastida
GSVIVT01015173001 No alias Protein biosynthesis.translation initiation.mRNA... 0.04 Archaeplastida
GSVIVT01035374001 No alias Protein biosynthesis.translation initiation.mRNA... 0.04 Archaeplastida
GSVIVT01036113001 No alias Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia 0.07 Archaeplastida
LOC_Os06g48750.2 No alias mRNA unwinding factor (eIF4A) 0.04 Archaeplastida
MA_10432535g0010 No alias Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp.... 0.04 Archaeplastida
Mp2g02760.1 No alias mRNA unwinding factor (eIF4A) 0.03 Archaeplastida
Mp4g09540.1 No alias helicase component eIF4A3 of RNA quality control Exon... 0.02 Archaeplastida
Pp3c11_22980V3.1 No alias eukaryotic translation initiation factor 4A1 0.03 Archaeplastida
Pp3c19_19960V3.1 No alias eukaryotic initiation factor 4A-III 0.05 Archaeplastida
Pp3c22_4200V3.1 No alias eukaryotic initiation factor 4A-III 0.02 Archaeplastida
Pp3c6_1080V3.1 No alias eukaryotic translation initiation factor 4A1 0.02 Archaeplastida
Pp3s93_30V3.1 No alias eukaryotic translation initiation factor 4A1 0.06 Archaeplastida
Solyc08g062800.3.1 No alias mRNA unwinding factor (eIF4A) 0.06 Archaeplastida
Solyc11g033280.2.1 No alias helicase component eIF4A3 of RNA quality control Exon... 0.03 Archaeplastida
Solyc12g095990.2.1 No alias mRNA unwinding factor (eIF4A) 0.05 Archaeplastida
Solyc12g096000.2.1 No alias mRNA unwinding factor (eIF4A) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
CC GO:0000502 proteasome complex IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006520 cellular amino acid metabolic process IEP Neighborhood
BP GO:0006606 protein import into nucleus IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009894 regulation of catabolic process IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
MF GO:0030515 snoRNA binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0033365 protein localization to organelle IEP Neighborhood
BP GO:0034504 protein localization to nucleus IEP Neighborhood
BP GO:0034613 cellular protein localization IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042176 regulation of protein catabolic process IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051170 import into nucleus IEP Neighborhood
BP GO:0051246 regulation of protein metabolic process IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
MF GO:0061608 nuclear import signal receptor activity IEP Neighborhood
BP GO:0070727 cellular macromolecule localization IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
BP GO:0072594 establishment of protein localization to organelle IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
CC GO:1905368 peptidase complex IEP Neighborhood
CC GO:1905369 endopeptidase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001650 Helicase_C 260 368
IPR011545 DEAD/DEAH_box_helicase_dom 59 221
No external refs found!