Zm00001e017515_P001

Description : pectin methylesterase

Gene families : OG0000046 (Archaeplastida) Phylogenetic Tree(s): OG0000046_tree ,
OG_05_0000020 (LandPlants) Phylogenetic Tree(s): OG_05_0000020_tree ,
OG_06_0000014 (SeedPlants) Phylogenetic Tree(s): OG_06_0000014_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e017515_P001
Cluster	HCCA: Cluster_362

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00230630	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.05	Archaeplastida
AMTR_s00007p00101250	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
AMTR_s00021p00242180	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.08	Archaeplastida
AMTR_s00071p00109420	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AMTR_s00129p00031200	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
AMTR_s00129p00073090	evm_27.TU.AmTr_v1...	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
AT1G23200	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
AT1G53830	ATPME2, PME2	pectin methylesterase 2	0.04	Archaeplastida
AT3G10710	RHS12	root hair specific 12	0.04	Archaeplastida
AT3G43270	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
AT3G47400	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.05	Archaeplastida
AT3G49220	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.11	Archaeplastida
AT4G00190	PME38, ATPME38	pectin methylesterase 38	0.02	Archaeplastida
AT4G02320	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT4G33220	PME44, ATPME44	pectin methylesterase 44	0.09	Archaeplastida
AT4G33230	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Archaeplastida
AT5G04960	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
AT5G04970	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT5G49180	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.04	Archaeplastida
AT5G51500	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
AT5G53370	ATPMEPCRF, PMEPCRF	pectin methylesterase PCR fragment F	0.04	Archaeplastida
GSVIVT01016667001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
GSVIVT01017687001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
GSVIVT01026518001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
GSVIVT01027652001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.03	Archaeplastida
GSVIVT01028040001	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.04	Archaeplastida
Gb_01422	No alias	pectin methylesterase	0.04	Archaeplastida
Gb_28162	No alias	pectin methylesterase	0.03	Archaeplastida
Gb_36012	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g13320.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g15039.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os01g21034.1	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os01g57854.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os02g18650.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os02g54190.1	No alias	pectin methylesterase	0.05	Archaeplastida
LOC_Os05g29790.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os06g09340.1	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os07g47830.1	No alias	pectin methylesterase	0.04	Archaeplastida
LOC_Os08g34900.1	No alias	pectin methylesterase	0.03	Archaeplastida
LOC_Os11g07090.1	No alias	pectin methylesterase	0.03	Archaeplastida
MA_101025g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_10332149g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_10377619g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_133919g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_177599g0010	No alias	pectin methylesterase	0.02	Archaeplastida
MA_26888g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_648837g0010	No alias	pectin methylesterase	0.04	Archaeplastida
MA_931259g0010	No alias	pectin methylesterase	0.04	Archaeplastida
Pp3c17_6440V3.1	No alias	pectin methylesterase PCR fragment F	0.03	Archaeplastida
Pp3c21_11740V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
Pp3c26_2170V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Archaeplastida
Pp3c4_22420V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.02	Archaeplastida
Pp3c8_3840V3.1	No alias	Plant invertase/pectin methylesterase inhibitor superfamily	0.03	Archaeplastida
Smo114014	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
Smo154356	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.02	Archaeplastida
Smo420760	No alias	Cell wall.pectin.homogalacturonan.modification and...	0.06	Archaeplastida
Solyc01g091050.4.1	No alias	pectin methylesterase	0.08	Archaeplastida
Solyc01g099950.1.1	No alias	pectin methylesterase	0.03	Archaeplastida
Solyc02g080200.4.1	No alias	no hits & (original description: none)	0.05	Archaeplastida
Solyc02g080220.3.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc03g078100.3.1	No alias	pectin methylesterase	0.02	Archaeplastida
Solyc07g064190.3.1	No alias	pectin methylesterase	0.05	Archaeplastida
Zm00001e017514_P001	No alias	pectin methylesterase	0.03	Archaeplastida
Zm00001e035838_P001	No alias	pectin methylesterase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004857	enzyme inhibitor activity	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0030234	enzyme regulator activity	None	Extended
MF	GO:0030599	pectinesterase activity	IEA	Interproscan
BP	GO:0042545	cell wall modification	IEA	Interproscan
BP	GO:0045229	external encapsulating structure organization	None	Extended
MF	GO:0052689	carboxylic ester hydrolase activity	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004107	chorismate synthase activity	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006457	protein folding	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006631	fatty acid metabolic process	IEP	Neighborhood
BP	GO:0006633	fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
MF	GO:0009055	electron transfer activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009073	aromatic amino acid family biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016053	organic acid biosynthetic process	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016717	oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016746	transferase activity, transferring acyl groups	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
BP	GO:0019752	carboxylic acid metabolic process	IEP	Neighborhood
MF	GO:0020037	heme binding	IEP	Neighborhood
BP	GO:0032787	monocarboxylic acid metabolic process	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0044255	cellular lipid metabolic process	IEP	Neighborhood
BP	GO:0044281	small molecule metabolic process	IEP	Neighborhood
BP	GO:0044283	small molecule biosynthetic process	IEP	Neighborhood
MF	GO:0045300	acyl-[acyl-carrier-protein] desaturase activity	IEP	Neighborhood
BP	GO:0046394	carboxylic acid biosynthetic process	IEP	Neighborhood
MF	GO:0046906	tetrapyrrole binding	IEP	Neighborhood
MF	GO:0048037	cofactor binding	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
MF	GO:0051536	iron-sulfur cluster binding	IEP	Neighborhood
MF	GO:0051540	metal cluster binding	IEP	Neighborhood
BP	GO:0055114	oxidation-reduction process	IEP	Neighborhood
BP	GO:0072330	monocarboxylic acid biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000070	Pectinesterase_cat	252	549
IPR006501	Pectinesterase_inhib_dom	42	200

External Links

No external refs found!

Zm00001e017515_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation