1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e018409_P001

Zm00001e018409_P001


Description : component BAF255/170 of chromatin remodeling complex


Gene families : OG0000902 (Archaeplastida) Phylogenetic Tree(s): OG0000902_tree ,
OG_05_0007216 (LandPlants) Phylogenetic Tree(s): OG_05_0007216_tree ,
OG_06_0008401 (SeedPlants) Phylogenetic Tree(s): OG_06_0008401_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018409_P001
Cluster HCCA: Cluster_313

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00059p00072490 evm_27.TU.AmTr_v1... Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
AT1G21700 CHB4, SWI3C, ATSWI3C SWITCH/sucrose nonfermenting 3C 0.04 Archaeplastida
AT4G34430 CHB3, ATSWI3D DNA-binding family protein 0.04 Archaeplastida
Cre08.g364050 No alias Chromatin organisation.chromatin remodeling... 0.02 Archaeplastida
GSVIVT01008584001 No alias Chromatin organisation.chromatin remodeling... 0.03 Archaeplastida
GSVIVT01008831001 No alias Chromatin organisation.chromatin remodeling... 0.04 Archaeplastida
GSVIVT01031951001 No alias Chromatin organisation.chromatin remodeling... 0.05 Archaeplastida
Gb_22023 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida
LOC_Os02g10060.1 No alias component BAF255/170 of chromatin remodeling complex 0.09 Archaeplastida
LOC_Os04g40420.1 No alias component BAF255/170 of chromatin remodeling complex 0.05 Archaeplastida
LOC_Os12g07730.1 No alias component BAF255/170 of chromatin remodeling complex 0.08 Archaeplastida
MA_10426514g0020 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
MA_10426836g0010 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
MA_10432371g0010 No alias component BAF255/170 of chromatin remodeling complex 0.04 Archaeplastida
MA_10432371g0020 No alias no hits & (original description: none) 0.03 Archaeplastida
Mp8g15610.1 No alias component BAF255/170 of chromatin remodeling complex 0.02 Archaeplastida
Pp3c10_9060V3.1 No alias SWITCH/sucrose nonfermenting 3C 0.03 Archaeplastida
Pp3c2_24980V3.1 No alias switch subunit 3 0.03 Archaeplastida
Solyc01g109510.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.04 Archaeplastida
Solyc06g060120.3.1 No alias component BAF255/170 of chromatin remodeling complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
CC GO:0000151 ubiquitin ligase complex IEP Neighborhood
CC GO:0000152 nuclear ubiquitin ligase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005680 anaphase-promoting complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0007088 regulation of mitotic nuclear division IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010965 regulation of mitotic sister chromatid separation IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
CC GO:0030014 CCR4-NOT complex IEP Neighborhood
BP GO:0030071 regulation of mitotic metaphase/anaphase transition IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031461 cullin-RING ubiquitin ligase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0033044 regulation of chromosome organization IEP Neighborhood
BP GO:0033045 regulation of sister chromatid segregation IEP Neighborhood
BP GO:0033047 regulation of mitotic sister chromatid segregation IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051783 regulation of nuclear division IEP Neighborhood
BP GO:0051983 regulation of chromosome segregation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902099 regulation of metaphase/anaphase transition of cell cycle IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
BP GO:1905818 regulation of chromosome separation IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR007526 SWIRM 190 276
IPR001005 SANT/Myb 421 462
IPR032451 SMARCC_C 583 657
No external refs found!