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  5. Zm00001e018566_P001

Zm00001e018566_P001


Description : component RNPS1 of RNA quality control Exon Junction complex


Gene families : OG0003818 (Archaeplastida) Phylogenetic Tree(s): OG0003818_tree ,
OG_05_0002920 (LandPlants) Phylogenetic Tree(s): OG_05_0002920_tree ,
OG_06_0004355 (SeedPlants) Phylogenetic Tree(s): OG_06_0004355_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e018566_P001
Cluster HCCA: Cluster_132

Target Alias Description ECC score Gene Family Method Actions
AT1G16610 RNPS1, SR45 arginine/serine-rich 45 0.03 Archaeplastida
GSVIVT01020424001 No alias RNA processing.RNA quality control Exon Junction complex... 0.04 Archaeplastida
LOC_Os01g72890.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.07 Archaeplastida
MA_10428760g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp4g11580.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Solyc10g005590.4.1 No alias component RNPS1 of RNA quality control Exon Junction complex 0.1 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 110 177
No external refs found!