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  5. Zm00001e019460_P001

Zm00001e019460_P001


Description : Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana (sp|q9luc2|pp231_arath : 343.0)


Gene families : OG0011611 (Archaeplastida) Phylogenetic Tree(s): OG0011611_tree ,
OG_05_0011877 (LandPlants) Phylogenetic Tree(s): OG_05_0011877_tree ,
OG_06_0011861 (SeedPlants) Phylogenetic Tree(s): OG_06_0011861_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e019460_P001
Cluster HCCA: Cluster_229

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01018393001 No alias Pentatricopeptide repeat-containing protein At1g09410,... 0.03 Archaeplastida
LOC_Os01g60250.1 No alias Pentatricopeptide repeat-containing protein At3g14730... 0.04 Archaeplastida
Solyc08g005390.1.1 No alias Pentatricopeptide repeat-containing protein At2g22410,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
MF GO:0046872 metal ion binding IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 374 419
IPR002885 Pentatricopeptide_repeat 167 196
IPR002885 Pentatricopeptide_repeat 139 165
IPR002885 Pentatricopeptide_repeat 239 261
IPR002885 Pentatricopeptide_repeat 516 542
No external refs found!