AT3G24315 (AtSec20)

Aliases : AtSec20

Description : Sec20 family protein

Gene families : OG0004878 (Archaeplastida) Phylogenetic Tree(s): OG0004878_tree ,
OG_05_0004865 (LandPlants) Phylogenetic Tree(s): OG_05_0004865_tree ,
OG_06_0005809 (SeedPlants) Phylogenetic Tree(s): OG_06_0005809_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G24315
Cluster	HCCA: Cluster_217

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	None	Extended
MF	GO:0003674	molecular_function	ND	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005737	cytoplasm	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006073	cellular glucan metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009250	glucan biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
BP	GO:0016192	vesicle-mediated transport	None	Extended
BP	GO:0030243	cellulose metabolic process	None	Extended
BP	GO:0030244	cellulose biosynthetic process	RCA	Interproscan
BP	GO:0033692	cellular polysaccharide biosynthetic process	None	Extended
BP	GO:0034637	cellular carbohydrate biosynthetic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044042	glucan metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044262	cellular carbohydrate metabolic process	None	Extended
BP	GO:0044264	cellular polysaccharide metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048193	Golgi vesicle transport	RCA	Interproscan
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051273	beta-glucan metabolic process	None	Extended
BP	GO:0051274	beta-glucan biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
CC	GO:0000932	P-body	IEP	Neighborhood
MF	GO:0003729	mRNA binding	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0004034	aldose 1-epimerase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
BP	GO:0005996	monosaccharide metabolic process	IEP	Neighborhood
BP	GO:0006012	galactose metabolic process	IEP	Neighborhood
BP	GO:0006082	organic acid metabolic process	IEP	Neighborhood
BP	GO:0006301	postreplication repair	IEP	Neighborhood
BP	GO:0006555	methionine metabolic process	IEP	Neighborhood
BP	GO:0006638	neutral lipid metabolic process	IEP	Neighborhood
BP	GO:0006639	acylglycerol metabolic process	IEP	Neighborhood
BP	GO:0006641	triglyceride metabolic process	IEP	Neighborhood
BP	GO:0006651	diacylglycerol biosynthetic process	IEP	Neighborhood
BP	GO:0006714	sesquiterpenoid metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006807	nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
BP	GO:0009687	abscisic acid metabolic process	IEP	Neighborhood
BP	GO:0009834	plant-type secondary cell wall biogenesis	IEP	Neighborhood
BP	GO:0010072	primary shoot apical meristem specification	IEP	Neighborhood
BP	GO:0010417	glucuronoxylan biosynthetic process	IEP	Neighborhood
BP	GO:0010431	seed maturation	IEP	Neighborhood
MF	GO:0016763	transferase activity, transferring pentosyl groups	IEP	Neighborhood
MF	GO:0016854	racemase and epimerase activity	IEP	Neighborhood
MF	GO:0016857	racemase and epimerase activity, acting on carbohydrates and derivatives	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
BP	GO:0019432	triglyceride biosynthetic process	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
CC	GO:0030117	membrane coat	IEP	Neighborhood
CC	GO:0030118	clathrin coat	IEP	Neighborhood
CC	GO:0030120	vesicle coat	IEP	Neighborhood
CC	GO:0030125	clathrin vesicle coat	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
CC	GO:0030427	site of polarized growth	IEP	Neighborhood
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
CC	GO:0035770	ribonucleoprotein granule	IEP	Neighborhood
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Neighborhood
MF	GO:0042285	xylosyltransferase activity	IEP	Neighborhood
BP	GO:0043288	apocarotenoid metabolic process	IEP	Neighborhood
BP	GO:0043436	oxoacid metabolic process	IEP	Neighborhood
BP	GO:0044272	sulfur compound biosynthetic process	IEP	Neighborhood
CC	GO:0044433	cytoplasmic vesicle part	IEP	Neighborhood
BP	GO:0046339	diacylglycerol metabolic process	IEP	Neighborhood
BP	GO:0046460	neutral lipid biosynthetic process	IEP	Neighborhood
BP	GO:0046463	acylglycerol biosynthetic process	IEP	Neighborhood
MF	GO:0050072	m7G(5')pppN diphosphatase activity	IEP	Neighborhood
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	Neighborhood
BP	GO:0090421	embryonic meristem initiation	IEP	Neighborhood
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Neighborhood
BP	GO:1902644	tertiary alcohol metabolic process	IEP	Neighborhood
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005606	Sec20	146	237

External Links

No external refs found!

AT3G24315 (AtSec20)

Expression Profile

Co-expression Networks

Functional Annotation