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  5. Zm00001e020614_P001

Zm00001e020614_P001


Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana (sp|q9m3a8|pp273_arath : 501.0)


Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020614_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
Gb_33747 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.07 Archaeplastida
Gb_33759 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.12 Archaeplastida
LOC_Os05g30240.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.05 Archaeplastida
LOC_Os11g24570.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.04 Archaeplastida
MA_118904g0010 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.02 Archaeplastida
Solyc01g103160.3.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.02 Archaeplastida
Solyc03g083280.4.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.06 Archaeplastida
Zm00001e004732_P001 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 460 507
IPR002885 Pentatricopeptide_repeat 390 438
IPR002885 Pentatricopeptide_repeat 281 310
IPR002885 Pentatricopeptide_repeat 248 271
IPR002885 Pentatricopeptide_repeat 208 237
IPR002885 Pentatricopeptide_repeat 359 388
IPR002885 Pentatricopeptide_repeat 129 180
IPR002885 Pentatricopeptide_repeat 318 343
No external refs found!