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  5. Zm00001e020692_P003

Zm00001e020692_P003


Description : UBP1-associated protein 2C OS=Arabidopsis thaliana (sp|q9lka4|uba2c_arath : 218.0)


Gene families : OG0000953 (Archaeplastida) Phylogenetic Tree(s): OG0000953_tree ,
OG_05_0000628 (LandPlants) Phylogenetic Tree(s): OG_05_0000628_tree ,
OG_06_0000928 (SeedPlants) Phylogenetic Tree(s): OG_06_0000928_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e020692_P003
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00228130 evm_27.TU.AmTr_v1... UBP1-associated protein 2A OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00021p00110500 evm_27.TU.AmTr_v1... UBP1-associated protein 2C OS=Arabidopsis thaliana 0.03 Archaeplastida
AMTR_s00101p00033020 evm_27.TU.AmTr_v1... UBP1-associated protein 2A OS=Arabidopsis thaliana 0.02 Archaeplastida
AMTR_s00101p00040700 evm_27.TU.AmTr_v1... UBP1-associated protein 2A OS=Arabidopsis thaliana 0.03 Archaeplastida
Gb_01713 No alias UBP1-associated protein 2A OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_04917 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g42820.3 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.1 Archaeplastida
MA_129986g0010 No alias UBP1-associated protein 2B OS=Arabidopsis thaliana... 0.05 Archaeplastida
MA_158497g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_3634858g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
MA_8212g0010 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc02g021560.4.1 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.04 Archaeplastida
Solyc12g014210.3.1 No alias UBP1-associated protein 2C OS=Arabidopsis thaliana... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
MF GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016903 oxidoreductase activity, acting on the aldehyde or oxo group of donors IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 178 235
IPR000504 RRM_dom 77 143
No external refs found!