AT3G27010 (AT-TCP20, TCP20, PCF1, ATTCP20)

Aliases : AT-TCP20, TCP20, PCF1, ATTCP20

Description : TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Gene families : OG0000415 (Archaeplastida) Phylogenetic Tree(s): OG0000415_tree ,
OG_05_0000215 (LandPlants) Phylogenetic Tree(s): OG_05_0000215_tree ,
OG_06_0000299 (SeedPlants) Phylogenetic Tree(s): OG_06_0000299_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G27010
Cluster	HCCA: Cluster_215

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00040760	evm_27.TU.AmTr_v1...	Multi-process regulation.circadian clock.morning element...	0.05	Archaeplastida
AT2G45680	No alias	TCP family transcription factor	0.04	Archaeplastida
Gb_34229	No alias	transcription factor (TCP)	0.03	Archaeplastida
LOC_Os01g14380.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os12g07480.1	No alias	transcription factor (TCP)	0.02	Archaeplastida
Mp7g09490.1	No alias	transcription factor (TCP)	0.02	Archaeplastida
Pp3c10_20400V3.1	No alias	TEOSINTE BRANCHED, cycloidea and PCF (TCP) 14	0.02	Archaeplastida
Smo441321	No alias	RNA biosynthesis.transcriptional activation.TCP...	0.02	Archaeplastida
Solyc04g009180.3.1	No alias	transcription factor (TCP). CHE circadian clock repression factor	0.03	Archaeplastida
Zm00001e023066_P001	No alias	transcription factor (TCP). CHE circadian clock repression factor	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000976	transcription regulatory region sequence-specific DNA binding	None	Extended
MF	GO:0000987	proximal promoter sequence-specific DNA binding	IDA	Interproscan
MF	GO:0001067	regulatory region nucleic acid binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IDA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008361	regulation of cell size	IGI	Interproscan
BP	GO:0009653	anatomical structure morphogenesis	TAS	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0043565	sequence-specific DNA binding	IPI	Interproscan
MF	GO:0044212	transcription regulatory region DNA binding	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048831	regulation of shoot system development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0090066	regulation of anatomical structure size	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900055	regulation of leaf senescence	None	Extended
BP	GO:1900056	negative regulation of leaf senescence	IGI	Interproscan
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1905622	negative regulation of leaf development	None	Extended
MF	GO:1990837	sequence-specific double-stranded DNA binding	None	Extended
BP	GO:2000024	regulation of leaf development	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000287	magnesium ion binding	IEP	Neighborhood
BP	GO:0000578	embryonic axis specification	IEP	Neighborhood
CC	GO:0000932	P-body	IEP	Neighborhood
MF	GO:0003997	acyl-CoA oxidase activity	IEP	Neighborhood
MF	GO:0004605	phosphatidate cytidylyltransferase activity	IEP	Neighborhood
MF	GO:0004713	protein tyrosine kinase activity	IEP	Neighborhood
CC	GO:0005770	late endosome	IEP	Neighborhood
BP	GO:0006855	drug transmembrane transport	IEP	Neighborhood
BP	GO:0007275	multicellular organism development	IEP	Neighborhood
MF	GO:0008172	S-methyltransferase activity	IEP	Neighborhood
BP	GO:0008300	isoprenoid catabolic process	IEP	Neighborhood
MF	GO:0008898	S-adenosylmethionine-homocysteine S-methyltransferase activity	IEP	Neighborhood
BP	GO:0009643	photosynthetic acclimation	IEP	Neighborhood
BP	GO:0009798	axis specification	IEP	Neighborhood
BP	GO:0010200	response to chitin	IEP	Neighborhood
BP	GO:0010229	inflorescence development	IEP	Neighborhood
BP	GO:0010540	basipetal auxin transport	IEP	Neighborhood
CC	GO:0012505	endomembrane system	IEP	Neighborhood
BP	GO:0016054	organic acid catabolic process	IEP	Neighborhood
BP	GO:0016103	diterpenoid catabolic process	IEP	Neighborhood
BP	GO:0016115	terpenoid catabolic process	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
MF	GO:0016634	oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
MF	GO:0030276	clathrin binding	IEP	Neighborhood
BP	GO:0031087	deadenylation-independent decapping of nuclear-transcribed mRNA	IEP	Neighborhood
BP	GO:0032501	multicellular organismal process	IEP	Neighborhood
BP	GO:0032509	endosome transport via multivesicular body sorting pathway	IEP	Neighborhood
CC	GO:0035770	ribonucleoprotein granule	IEP	Neighborhood
CC	GO:0036464	cytoplasmic ribonucleoprotein granule	IEP	Neighborhood
BP	GO:0042447	hormone catabolic process	IEP	Neighborhood
BP	GO:0042754	negative regulation of circadian rhythm	IEP	Neighborhood
BP	GO:0045176	apical protein localization	IEP	Neighborhood
BP	GO:0045487	gibberellin catabolic process	IEP	Neighborhood
MF	GO:0045543	gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
BP	GO:0046395	carboxylic acid catabolic process	IEP	Neighborhood
BP	GO:0048856	anatomical structure development	IEP	Neighborhood
MF	GO:0050072	m7G(5')pppN diphosphatase activity	IEP	Neighborhood
MF	GO:0052634	C-19 gibberellin 2-beta-dioxygenase activity	IEP	Neighborhood
MF	GO:0070567	cytidylyltransferase activity	IEP	Neighborhood
BP	GO:0071985	multivesicular body sorting pathway	IEP	Neighborhood
MF	GO:0080025	phosphatidylinositol-3,5-bisphosphate binding	IEP	Neighborhood
MF	GO:1901981	phosphatidylinositol phosphate binding	IEP	Neighborhood
MF	GO:1902936	phosphatidylinositol bisphosphate binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR017887	TF_TCP_subgr	77	256

External Links

No external refs found!

AT3G27010 (AT-TCP20, TCP20, PCF1, ATTCP20)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation