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  5. Zm00001e023481_P001

Zm00001e023481_P001


Description : APO protein 2, chloroplastic OS=Arabidopsis thaliana (sp|q8w4a5|apo2_arath : 428.0)


Gene families : OG0000992 (Archaeplastida) Phylogenetic Tree(s): OG0000992_tree ,
OG_05_0001157 (LandPlants) Phylogenetic Tree(s): OG_05_0001157_tree ,
OG_06_0003046 (SeedPlants) Phylogenetic Tree(s): OG_06_0003046_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e023481_P001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00027190 evm_27.TU.AmTr_v1... APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01018392001 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana 0.15 Archaeplastida
GSVIVT01023615001 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_29513 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
Gb_36551 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.04 Archaeplastida
LOC_Os02g50010.1 No alias APO protein 2, chloroplastic OS=Arabidopsis thaliana... 0.07 Archaeplastida
LOC_Os04g52520.4 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.03 Archaeplastida
Pp3c1_33440V3.1 No alias Arabidopsis thaliana protein of unknown function (DUF794) 0.02 Archaeplastida
Solyc08g080250.4.1 No alias APO protein 1, chloroplastic OS=Arabidopsis thaliana... 0.05 Archaeplastida
Solyc09g009400.4.1 No alias APO protein 3, mitochondrial OS=Arabidopsis thaliana... 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
InterPro domains Description Start Stop
IPR023342 APO_dom 71 270
IPR023342 APO_dom 305 419
No external refs found!