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  5. AT1G14420

AT1G14420 (AT59)


Aliases : AT59

Description : Pectate lyase family protein


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G14420
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00123190 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.15 Archaeplastida
AMTR_s00039p00186640 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.15 Archaeplastida
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G67750 No alias Pectate lyase family protein 0.03 Archaeplastida
AT3G07010 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
AT3G24670 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
AT3G54920 PMR6 Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G09280 No alias Pectin lyase-like superfamily protein 0.06 Archaeplastida
AT5G48900 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
GSVIVT01003984001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01008053001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.15 Archaeplastida
GSVIVT01011348001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.11 Archaeplastida
GSVIVT01016208001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
GSVIVT01016209001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.01 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.18 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.17 Archaeplastida
GSVIVT01024239001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
Gb_02248 No alias pectate lyase 0.02 Archaeplastida
LOC_Os02g12300.1 No alias pectate lyase 0.1 Archaeplastida
LOC_Os04g05050.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g05209.1 No alias pectate lyase 0.15 Archaeplastida
LOC_Os06g05260.1 No alias pectate lyase 0.16 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.08 Archaeplastida
MA_10428603g0020 No alias pectate lyase 0.02 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.03 Archaeplastida
MA_10437227g0030 No alias pectate lyase 0.04 Archaeplastida
MA_1164682g0010 No alias pectate lyase 0.02 Archaeplastida
MA_204440g0010 No alias Enzyme classification.EC_4 lyases.EC_4.2 carbon-oxygen... 0.03 Archaeplastida
MA_474372g0010 No alias pectate lyase 0.01 Archaeplastida
MA_66914g0010 No alias pectate lyase 0.03 Archaeplastida
Mp8g00770.1 No alias pectate lyase 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Pp3c14_6710V3.1 No alias Pectin lyase-like superfamily protein 0.05 Archaeplastida
Pp3c1_10470V3.1 No alias Pectin lyase-like superfamily protein 0.01 Archaeplastida
Pp3c22_19760V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c22_19780V3.1 No alias Pectate lyase family protein 0.04 Archaeplastida
Pp3c3_20320V3.1 No alias Pectin lyase-like superfamily protein 0.02 Archaeplastida
Pp3c3_35190V3.1 No alias Pectin lyase-like superfamily protein 0.04 Archaeplastida
Smo407495 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
Solyc01g010740.4.1 No alias pectate lyase 0.03 Archaeplastida
Solyc02g031960.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.15 Archaeplastida
Solyc02g087670.3.1 No alias pectate lyase 0.07 Archaeplastida
Solyc02g093580.4.1 No alias pectate lyase 0.04 Archaeplastida
Solyc03g058890.4.1 No alias pectate lyase 0.16 Archaeplastida
Solyc03g058910.3.1 No alias pectate lyase 0.13 Archaeplastida
Solyc03g113150.3.1 No alias pectate lyase 0.06 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.17 Archaeplastida
Solyc06g071020.3.1 No alias pectate lyase 0.08 Archaeplastida
Solyc06g083580.4.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e024959_P001 No alias pectate lyase 0.09 Archaeplastida
Zm00001e029999_P001 No alias pectate lyase 0.02 Archaeplastida
Zm00001e030632_P001 No alias pectate lyase 0.02 Archaeplastida
Zm00001e037311_P001 No alias pectate lyase 0.1 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0009664 plant-type cell wall organization TAS Interproscan
BP GO:0009827 plant-type cell wall modification RCA Interproscan
MF GO:0016829 lyase activity ISS Interproscan
MF GO:0030570 pectate lyase activity ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000295 adenine nucleotide transmembrane transporter activity IEP Neighborhood
BP GO:0000902 cell morphogenesis IEP Neighborhood
BP GO:0000904 cell morphogenesis involved in differentiation IEP Neighborhood
BP GO:0001558 regulation of cell growth IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0004674 protein serine/threonine kinase activity IEP Neighborhood
MF GO:0004683 calmodulin-dependent protein kinase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005242 inward rectifier potassium channel activity IEP Neighborhood
MF GO:0005275 amine transmembrane transporter activity IEP Neighborhood
MF GO:0005346 purine ribonucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0005347 ATP transmembrane transporter activity IEP Neighborhood
MF GO:0005451 monovalent cation:proton antiporter activity IEP Neighborhood
MF GO:0005471 ATP:ADP antiporter activity IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
CC GO:0005886 plasma membrane IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006814 sodium ion transport IEP Neighborhood
BP GO:0006862 nucleotide transport IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0006935 chemotaxis IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009826 unidimensional cell growth IEP Neighborhood
BP GO:0009860 pollen tube growth IEP Neighborhood
BP GO:0009932 cell tip growth IEP Neighborhood
CC GO:0010005 cortical microtubule, transverse to long axis IEP Neighborhood
BP GO:0010183 pollen tube guidance IEP Neighborhood
BP GO:0010215 cellulose microfibril organization IEP Neighborhood
BP GO:0010769 regulation of cell morphogenesis involved in differentiation IEP Neighborhood
BP GO:0010959 regulation of metal ion transport IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015077 monovalent inorganic cation transmembrane transporter activity IEP Neighborhood
MF GO:0015078 proton transmembrane transporter activity IEP Neighborhood
MF GO:0015081 sodium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015216 purine nucleotide transmembrane transporter activity IEP Neighborhood
MF GO:0015217 ADP transmembrane transporter activity IEP Neighborhood
MF GO:0015291 secondary active transmembrane transporter activity IEP Neighborhood
MF GO:0015297 antiporter activity IEP Neighborhood
MF GO:0015298 solute:cation antiporter activity IEP Neighborhood
MF GO:0015299 solute:proton antiporter activity IEP Neighborhood
MF GO:0015301 anion:anion antiporter activity IEP Neighborhood
MF GO:0015385 sodium:proton antiporter activity IEP Neighborhood
MF GO:0015491 cation:cation antiporter activity IEP Neighborhood
CC GO:0015630 microtubule cytoskeleton IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0015748 organophosphate ester transport IEP Neighborhood
BP GO:0015865 purine nucleotide transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016049 cell growth IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
CC GO:0016324 apical plasma membrane IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022603 regulation of anatomical structure morphogenesis IEP Neighborhood
BP GO:0022604 regulation of cell morphogenesis IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030029 actin filament-based process IEP Neighborhood
BP GO:0030048 actin filament-based movement IEP Neighborhood
BP GO:0030198 extracellular matrix organization IEP Neighborhood
CC GO:0030427 site of polarized growth IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032989 cellular component morphogenesis IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
MF GO:0035250 UDP-galactosyltransferase activity IEP Neighborhood
BP GO:0035725 sodium ion transmembrane transport IEP Neighborhood
CC GO:0035838 growing cell tip IEP Neighborhood
BP GO:0040007 growth IEP Neighborhood
BP GO:0040008 regulation of growth IEP Neighborhood
BP GO:0040011 locomotion IEP Neighborhood
MF GO:0042284 sphingolipid delta-4 desaturase activity IEP Neighborhood
BP GO:0042330 taxis IEP Neighborhood
CC GO:0042995 cell projection IEP Neighborhood
BP GO:0043062 extracellular structure organization IEP Neighborhood
BP GO:0043068 positive regulation of programmed cell death IEP Neighborhood
BP GO:0043266 regulation of potassium ion transport IEP Neighborhood
BP GO:0043900 regulation of multi-organism process IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044463 cell projection part IEP Neighborhood
BP GO:0045595 regulation of cell differentiation IEP Neighborhood
MF GO:0046509 1,2-diacylglycerol 3-beta-galactosyltransferase activity IEP Neighborhood
BP GO:0046777 protein autophosphorylation IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0047635 alanine-oxo-acid transaminase activity IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048588 developmental cell growth IEP Neighborhood
BP GO:0048589 developmental growth IEP Neighborhood
BP GO:0048638 regulation of developmental growth IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
MF GO:0050378 UDP-glucuronate 4-epimerase activity IEP Neighborhood
BP GO:0050918 positive chemotaxis IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
CC GO:0051286 cell tip IEP Neighborhood
BP GO:0051503 adenine nucleotide transport IEP Neighborhood
BP GO:0051510 regulation of unidimensional cell growth IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0060284 regulation of cell development IEP Neighborhood
BP GO:0060560 developmental growth involved in morphogenesis IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
BP GO:0080092 regulation of pollen tube growth IEP Neighborhood
CC GO:0090404 pollen tube tip IEP Neighborhood
CC GO:0090406 pollen tube IEP Neighborhood
CC GO:0098590 plasma membrane region IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
MF GO:0099094 ligand-gated cation channel activity IEP Neighborhood
MF GO:0099516 ion antiporter activity IEP Neighborhood
CC GO:0120025 plasma membrane bounded cell projection IEP Neighborhood
CC GO:0120038 plasma membrane bounded cell projection part IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1901016 regulation of potassium ion transmembrane transporter activity IEP Neighborhood
BP GO:1901379 regulation of potassium ion transmembrane transport IEP Neighborhood
BP GO:1901979 regulation of inward rectifier potassium channel activity IEP Neighborhood
BP GO:2001257 regulation of cation channel activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 186 370
IPR007524 Pec_lyase_N 30 85
No external refs found!