Zm00001e024878_P003

Description : deubiquitinase (UBP15-21)

Gene families : OG0000242 (Archaeplastida) Phylogenetic Tree(s): OG0000242_tree ,
OG_05_0000881 (LandPlants) Phylogenetic Tree(s): OG_05_0000881_tree ,
OG_06_0001276 (SeedPlants) Phylogenetic Tree(s): OG_06_0001276_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e024878_P003
Cluster	HCCA: Cluster_352

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00096p00170210	evm_27.TU.AmTr_v1...	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
AT1G17110	UBP15	ubiquitin-specific protease 15	0.04	Archaeplastida
AT4G17895	UBP20	ubiquitin-specific protease 20	0.03	Archaeplastida
AT4G24560	UBP16	ubiquitin-specific protease 16	0.07	Archaeplastida
AT5G46740	UBP21	ubiquitin-specific protease 21	0.02	Archaeplastida
Cpa\|evm.model.tig00000403.102	No alias	Protein degradation.peptidase families.cysteine-type...	0.02	Archaeplastida
GSVIVT01000696001	No alias	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
GSVIVT01001911001	No alias	No description available	0.03	Archaeplastida
GSVIVT01014079001	No alias	Protein degradation.peptidase families.cysteine-type...	0.02	Archaeplastida
GSVIVT01033166001	No alias	Protein degradation.peptidase families.cysteine-type...	0.04	Archaeplastida
GSVIVT01038082001	No alias	Protein degradation.peptidase families.cysteine-type...	0.07	Archaeplastida
Gb_17492	No alias	Ubiquitin carboxyl-terminal hydrolase 15 OS=Arabidopsis...	0.02	Archaeplastida
Gb_28125	No alias	deubiquitinase (UBP25)	0.05	Archaeplastida
Gb_30872	No alias	deubiquitinase (UBP23)	0.02	Archaeplastida
Gb_38396	No alias	deubiquitinase (UBP15-21)	0.02	Archaeplastida
LOC_Os02g14730.1	No alias	deubiquitinase (UBP15-21)	0.05	Archaeplastida
LOC_Os02g55180.1	No alias	deubiquitinase (UBP23)	0.01	Archaeplastida
LOC_Os05g43480.1	No alias	deubiquitinase (UBP25)	0.05	Archaeplastida
LOC_Os08g37350.1	No alias	deubiquitinase (UBP15-21)	0.03	Archaeplastida
LOC_Os09g28940.1	No alias	deubiquitinase (UBP15-21)	0.04	Archaeplastida
MA_10429414g0020	No alias	deubiquitinase (UBP15-21)	0.04	Archaeplastida
MA_132593g0020	No alias	Ubiquitin carboxyl-terminal hydrolase 23 OS=Arabidopsis...	0.04	Archaeplastida
MA_53569g0010	No alias	deubiquitinase (UBP23)	0.03	Archaeplastida
Mp1g03220.1	No alias	Ubiquitin carboxyl-terminal hydrolase 25 OS=Arabidopsis...	0.05	Archaeplastida
Mp2g05560.1	No alias	deubiquitinase (UBP15-21)	0.04	Archaeplastida
Pp3c5_25690V3.1	No alias	ubiquitin-specific protease 18	0.02	Archaeplastida
Smo2719	No alias	Protein degradation.peptidase families.cysteine-type...	0.03	Archaeplastida
Smo420048	No alias	Protein degradation.peptidase families.cysteine-type...	0.03	Archaeplastida
Solyc04g076210.3.1	No alias	deubiquitinase (UBP15-21)	0.03	Archaeplastida
Solyc07g061780.4.1	No alias	deubiquitinase (UBP15-21)	0.08	Archaeplastida
Zm00001e003832_P001	No alias	deubiquitinase (UBP15-21)	0.02	Archaeplastida
Zm00001e014332_P001	No alias	deubiquitinase (UBP15-21)	0.03	Archaeplastida
Zm00001e015501_P001	No alias	Ubiquitin carboxyl-terminal hydrolase 21 OS=Arabidopsis...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008233	peptidase activity	None	Extended
MF	GO:0008234	cysteine-type peptidase activity	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016579	protein deubiquitination	IEA	Interproscan
MF	GO:0016787	hydrolase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019783	ubiquitin-like protein-specific protease activity	None	Extended
BP	GO:0036211	protein modification process	None	Extended
MF	GO:0036459	thiol-dependent ubiquitinyl hydrolase activity	IEA	Interproscan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	None	Extended
BP	GO:0070646	protein modification by small protein removal	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0101005	ubiquitinyl hydrolase activity	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000148	1,3-beta-D-glucan synthase complex	IEP	Neighborhood
MF	GO:0000166	nucleotide binding	IEP	Neighborhood
CC	GO:0000176	nuclear exosome (RNase complex)	IEP	Neighborhood
CC	GO:0000178	exosome (RNase complex)	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003678	DNA helicase activity	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003843	1,3-beta-D-glucan synthase activity	IEP	Neighborhood
MF	GO:0004518	nuclease activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004652	polynucleotide adenylyltransferase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
BP	GO:0006074	(1->3)-beta-D-glucan metabolic process	IEP	Neighborhood
BP	GO:0006075	(1->3)-beta-D-glucan biosynthetic process	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006259	DNA metabolic process	IEP	Neighborhood
BP	GO:0006281	DNA repair	IEP	Neighborhood
BP	GO:0006302	double-strand break repair	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006479	protein methylation	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008170	N-methyltransferase activity	IEP	Neighborhood
BP	GO:0008213	protein alkylation	IEP	Neighborhood
MF	GO:0008270	zinc ion binding	IEP	Neighborhood
MF	GO:0008276	protein methyltransferase activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0008483	transaminase activity	IEP	Neighborhood
MF	GO:0008757	S-adenosylmethionine-dependent methyltransferase activity	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
MF	GO:0016278	lysine N-methyltransferase activity	IEP	Neighborhood
MF	GO:0016279	protein-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0016569	covalent chromatin modification	IEP	Neighborhood
BP	GO:0016570	histone modification	IEP	Neighborhood
BP	GO:0016571	histone methylation	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016769	transferase activity, transferring nitrogenous groups	IEP	Neighborhood
MF	GO:0016788	hydrolase activity, acting on ester bonds	IEP	Neighborhood
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	IEP	Neighborhood
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
BP	GO:0018022	peptidyl-lysine methylation	IEP	Neighborhood
MF	GO:0018024	histone-lysine N-methyltransferase activity	IEP	Neighborhood
BP	GO:0018205	peptidyl-lysine modification	IEP	Neighborhood
CC	GO:0030014	CCR4-NOT complex	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0033554	cellular response to stress	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0034968	histone lysine methylation	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
MF	GO:0042054	histone methyltransferase activity	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043168	anion binding	IEP	Neighborhood
CC	GO:0043226	organelle	IEP	Neighborhood
CC	GO:0043227	membrane-bounded organelle	IEP	Neighborhood
CC	GO:0043229	intracellular organelle	IEP	Neighborhood
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
BP	GO:0043631	RNA polyadenylation	IEP	Neighborhood
CC	GO:0044424	intracellular part	IEP	Neighborhood
CC	GO:0044464	cell part	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
MF	GO:0046914	transition metal ion binding	IEP	Neighborhood
BP	GO:0050896	response to stimulus	IEP	Neighborhood
BP	GO:0051716	cellular response to stimulus	IEP	Neighborhood
MF	GO:0070566	adenylyltransferase activity	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
CC	GO:0098797	plasma membrane protein complex	IEP	Neighborhood
MF	GO:1901265	nucleoside phosphate binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1905354	exoribonuclease complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001394	Peptidase_C19_UCH	438	740
IPR002893	Znf_MYND	88	125

External Links

No external refs found!

Zm00001e024878_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation