Zm00001e024934_P002

Description : Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana (sp|q8w034|rnp1_arath : 169.0)

Gene families : OG0000233 (Archaeplastida) Phylogenetic Tree(s): OG0000233_tree ,
OG_05_0001171 (LandPlants) Phylogenetic Tree(s): OG_05_0001171_tree ,
OG_06_0001131 (SeedPlants) Phylogenetic Tree(s): OG_06_0001131_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e024934_P002
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00049p00200350	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.06	Archaeplastida
AMTR_s00065p00083440	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.06	Archaeplastida
AMTR_s00067p00185510	evm_27.TU.AmTr_v1...	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.09	Archaeplastida
AT2G33410	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.03	Archaeplastida
GSVIVT01009297001	No alias	RNA-binding protein 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01014729001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.03	Archaeplastida
GSVIVT01027891001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01028394001	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.04	Archaeplastida
Gb_29426	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Gb_33012	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
Gb_33485	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os02g12850.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.09	Archaeplastida
LOC_Os10g33230.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.11	Archaeplastida
MA_10432683g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
MA_125759g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.06	Archaeplastida
MA_141102g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.03	Archaeplastida
MA_473g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.04	Archaeplastida
MA_68291g0010	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Mp1g27850.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.02	Archaeplastida
Pp3c26_4470V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
Pp3c2_9200V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
Pp3c4_17440V3.1	No alias	RNA-binding (RRM/RBD/RNP motifs) family protein	0.02	Archaeplastida
Smo101375	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis thaliana	0.02	Archaeplastida
Solyc02g093340.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.09	Archaeplastida
Solyc03g005680.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.08	Archaeplastida
Solyc03g121710.2.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.06	Archaeplastida
Solyc07g045240.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.1	Archaeplastida
Solyc09g090520.3.1	No alias	Heterogeneous nuclear ribonucleoprotein 1 OS=Arabidopsis...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	Neighborhood
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	Neighborhood
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	Neighborhood
MF	GO:0003723	RNA binding	IEP	Neighborhood
MF	GO:0003724	RNA helicase activity	IEP	Neighborhood
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0004386	helicase activity	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
CC	GO:0005681	spliceosomal complex	IEP	Neighborhood
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0006396	RNA processing	IEP	Neighborhood
BP	GO:0006397	mRNA processing	IEP	Neighborhood
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
BP	GO:0016070	RNA metabolic process	IEP	Neighborhood
BP	GO:0016071	mRNA metabolic process	IEP	Neighborhood
MF	GO:0017076	purine nucleotide binding	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
MF	GO:0032553	ribonucleotide binding	IEP	Neighborhood
MF	GO:0032555	purine ribonucleotide binding	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0034641	cellular nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
BP	GO:0046483	heterocycle metabolic process	IEP	Neighborhood
BP	GO:0090304	nucleic acid metabolic process	IEP	Neighborhood
MF	GO:0097367	carbohydrate derivative binding	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR000504	RRM_dom	146	215
IPR000504	RRM_dom	57	124

External Links

No external refs found!

Zm00001e024934_P002

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation