Zm00001e025063_P001

Description : subfamily ABCB transporter

Gene families : OG0000057 (Archaeplastida) Phylogenetic Tree(s): OG0000057_tree ,
OG_05_0000720 (LandPlants) Phylogenetic Tree(s): OG_05_0000720_tree ,
OG_06_0000544 (SeedPlants) Phylogenetic Tree(s): OG_06_0000544_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e025063_P001

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00045p00108620	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
AMTR_s00045p00109940	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.04	Archaeplastida
AMTR_s00076p00195870	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
AMTR_s00090p00165440	evm_27.TU.AmTr_v1...	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
AT1G02520	PGP11	P-glycoprotein 11	0.02	Archaeplastida
AT1G27940	PGP13	P-glycoprotein 13	0.03	Archaeplastida
AT3G28345	No alias	ABC transporter family protein	0.01	Archaeplastida
AT3G28360	PGP16	P-glycoprotein 16	0.03	Archaeplastida
AT3G62150	PGP21	P-glycoprotein 21	0.02	Archaeplastida
AT4G01820	PGP3, MDR3	P-glycoprotein 3	0.02	Archaeplastida
AT4G18050	PGP9	P-glycoprotein 9	0.01	Archaeplastida
AT4G25960	PGP2	P-glycoprotein 2	0.02	Archaeplastida
AT5G46540	PGP7	P-glycoprotein 7	0.02	Archaeplastida
GSVIVT01000580001	No alias	ABC transporter B family member 15 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01009946001	No alias	Solute transport.primary active transport.ABC...	0.06	Archaeplastida
GSVIVT01013125001	No alias	Solute transport.primary active transport.ABC...	0.08	Archaeplastida
GSVIVT01015306001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01016617001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01021365001	No alias	Solute transport.primary active transport.ABC...	0.01	Archaeplastida
GSVIVT01028256001	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
GSVIVT01038687001	No alias	Solute transport.primary active transport.ABC...	0.03	Archaeplastida
Gb_02468	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_02469	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Gb_13906	No alias	subfamily ABCB transporter	0.05	Archaeplastida
Gb_13908	No alias	ABC transporter B family member 10 OS=Arabidopsis...	0.08	Archaeplastida
Gb_27347	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Gb_36862	No alias	subfamily ABCB transporter	0.07	Archaeplastida
LOC_Os01g50080.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
LOC_Os02g21750.1	No alias	subfamily ABCB transporter	0.04	Archaeplastida
LOC_Os04g38570.1	No alias	auxin efflux transporter (ABCB19)	0.01	Archaeplastida
LOC_Os08g45030.1	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_10432922g0010	No alias	subfamily ABCB transporter	0.03	Archaeplastida
MA_126766g0010	No alias	subfamily ABCB transporter	0.01	Archaeplastida
MA_6870g0010	No alias	subfamily ABCB transporter	0.02	Archaeplastida
MA_934204g0010	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Mp2g06270.1	No alias	subfamily ABCB transporter	0.01	Archaeplastida
Mp2g11920.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Pp3c1_7210V3.1	No alias	ATP binding cassette subfamily B19	0.01	Archaeplastida
Pp3c1_7215V3.1	No alias	ATP binding cassette subfamily B19	0.04	Archaeplastida
Smo408755	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Smo99885	No alias	Solute transport.primary active transport.ABC...	0.02	Archaeplastida
Solyc06g009280.1.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc08g076720.4.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc11g067300.2.1	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Solyc11g067310.3.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e006786_P002	No alias	no hits & (original description: none)	0.1	Archaeplastida
Zm00001e020073_P001	No alias	subfamily ABCB transporter	0.04	Archaeplastida
Zm00001e023274_P001	No alias	subfamily ABCB transporter	0.02	Archaeplastida
Zm00001e041008_P003	No alias	auxin efflux transporter (ABCB19). subfamily ABCB transporter	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
MF	GO:0008144	drug binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	None	Extended
CC	GO:0016021	integral component of membrane	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0016887	ATPase activity	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	nucleoside-triphosphatase activity	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
CC	GO:0031224	intrinsic component of membrane	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042623	ATPase activity, coupled	None	Extended
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEA	Interproscan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043492	ATPase activity, coupled to movement of substances	None	Extended
CC	GO:0044425	membrane part	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	IEA	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003439	ABC_transporter-like	381	527
IPR011527	ABC1_TM_dom	37	309
IPR011527	ABC1_TM_dom	677	946
IPR003439	ABC_transporter-like	1017	1165

External Links

No external refs found!

Zm00001e025063_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation