AT3G28958

Description : Cupredoxin superfamily protein

Gene families : OG0005412 (Archaeplastida) Phylogenetic Tree(s): OG0005412_tree ,
OG_05_0017427 (LandPlants) Phylogenetic Tree(s): OG_05_0017427_tree ,
OG_06_0016967 (SeedPlants) Phylogenetic Tree(s): OG_06_0016967_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G28958
Cluster	HCCA: Cluster_36

Target	Alias	Description	ECC score	Gene Family Method
AT1G43730	No alias	RNA-directed DNA polymerase (reverse...	0.01	Archaeplastida
AT1G45063	No alias	copper ion binding;electron carriers	0.02	Archaeplastida
AT1G60720	No alias	RNA-directed DNA polymerase (reverse...	0.01	Archaeplastida
AT4G04650	No alias	RNA-directed DNA polymerase (reverse...	0.02	Archaeplastida
AT4G05095	No alias	BEST Arabidopsis thaliana protein match is: RNA-directed...	0.06	Archaeplastida
AT5G11565	No alias	No description available	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
CC	GO:0016020	membrane	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0000412	histone peptidyl-prolyl isomerization	IEP	Neighborhood
BP	GO:0000413	protein peptidyl-prolyl isomerization	IEP	Neighborhood
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	Neighborhood
MF	GO:0005527	macrolide binding	IEP	Neighborhood
MF	GO:0005528	FK506 binding	IEP	Neighborhood
CC	GO:0009543	chloroplast thylakoid lumen	IEP	Neighborhood
MF	GO:0016853	isomerase activity	IEP	Neighborhood
MF	GO:0016859	cis-trans isomerase activity	IEP	Neighborhood
BP	GO:0018208	peptidyl-proline modification	IEP	Neighborhood
CC	GO:0031977	thylakoid lumen	IEP	Neighborhood
CC	GO:0031978	plastid thylakoid lumen	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003245	Phytocyanin_dom	86	143

External Links

No external refs found!