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  5. Zm00001e025837_P001

Zm00001e025837_P001


Description : Transcription initiation factor TFIID subunit 15b OS=Arabidopsis thaliana (sp|q94kd0|ta15b_arath : 153.0)


Gene families : OG0005595 (Archaeplastida) Phylogenetic Tree(s): OG0005595_tree ,
OG_05_0004944 (LandPlants) Phylogenetic Tree(s): OG_05_0004944_tree ,
OG_06_0007789 (SeedPlants) Phylogenetic Tree(s): OG_06_0007789_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025837_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00153p00073330 evm_27.TU.AmTr_v1... Transcription initiation factor TFIID subunit 15b... 0.05 Archaeplastida
AT5G58470 TAF15b TBP-associated factor 15B 0.08 Archaeplastida
LOC_Os01g07070.2 No alias Transcription initiation factor TFIID subunit 15b... 0.1 Archaeplastida
MA_10427252g0010 No alias Transcription initiation factor TFIID subunit 15b... 0.04 Archaeplastida
Mp7g03900.1 No alias Transcription initiation factor TFIID subunit 15b... 0.03 Archaeplastida
Pp3c12_3430V3.1 No alias TBP-associated factor 15B 0.02 Archaeplastida
Smo405186 No alias Transcription initiation factor TFIID subunit 15b... 0.03 Archaeplastida
Solyc06g082220.4.1 No alias Transcription initiation factor TFIID subunit 15b... 0.06 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 351 380
No external refs found!