1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e025923_P001

Zm00001e025923_P001


Description : RNA helicase component MTR4/HEN2 of Nuclear Exosome Targeting (NEXT) activation complex


Gene families : OG0000933 (Archaeplastida) Phylogenetic Tree(s): OG0000933_tree ,
OG_05_0002223 (LandPlants) Phylogenetic Tree(s): OG_05_0002223_tree ,
OG_06_0002622 (SeedPlants) Phylogenetic Tree(s): OG_06_0002622_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e025923_P001
Cluster HCCA: Cluster_350

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00200390 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
AMTR_s00029p00206820 evm_27.TU.AmTr_v1... RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
AT2G06990 HEN2 RNA helicase, ATP-dependent, SK12/DOB1 protein 0.02 Archaeplastida
Cpa|evm.model.tig00001155.2 No alias DExH-box ATP-dependent RNA helicase DExH11... 0.01 Archaeplastida
Cpa|evm.model.tig00020723.108 No alias RNA processing.RNA decay.exosome complex.associated... 0.01 Archaeplastida
Cre02.g117900 No alias RNA processing.RNA decay.exosome complex.associated... 0.04 Archaeplastida
Cre06.g289950 No alias RNA processing.RNA decay.exosome complex.associated... 0.01 Archaeplastida
Cre11.g482483 No alias RNA processing.RNA decay.exosome complex.associated... 0.02 Archaeplastida
Gb_23155 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida
Gb_30711 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 Archaeplastida
LOC_Os02g06500.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 Archaeplastida
MA_3056043g0010 No alias DExH-box ATP-dependent RNA helicase DExH10... 0.03 Archaeplastida
Mp1g05510.1 No alias RNA helicase component SKI2 of SUPERKILLER (SKI)... 0.02 Archaeplastida
Pp3c14_23340V3.1 No alias RNA helicase, ATP-dependent, SK12/DOB1 protein 0.03 Archaeplastida
Solyc01g103080.3.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.03 Archaeplastida
Solyc05g047520.4.1 No alias RNA helicase component MTR4/HEN2 of Nuclear Exosome... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
MF GO:0031625 ubiquitin protein ligase binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044265 cellular macromolecule catabolic process IEP Neighborhood
MF GO:0044389 ubiquitin-like protein ligase binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR012961 Ski2_C 829 998
IPR011545 DEAD/DEAH_box_helicase_dom 87 233
IPR025696 rRNA_proc-arch_dom 538 801
IPR001650 Helicase_C 376 482
No external refs found!