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  5. Zm00001e026443_P001

Zm00001e026443_P001


Description : transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)


Gene families : OG0000363 (Archaeplastida) Phylogenetic Tree(s): OG0000363_tree ,
OG_05_0000191 (LandPlants) Phylogenetic Tree(s): OG_05_0000191_tree ,
OG_06_0000701 (SeedPlants) Phylogenetic Tree(s): OG_06_0000701_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026443_P001
Cluster HCCA: Cluster_253

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00007p00238950 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.AP2/ERF... 0.07 Archaeplastida
AMTR_s00018p00040300 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
AT1G68840 EDF2, AtRAV2,... related to ABI3/VP1 2 0.03 Archaeplastida
AT2G36080 No alias AP2/B3-like transcriptional factor family protein 0.03 Archaeplastida
AT3G11580 No alias AP2/B3-like transcriptional factor family protein 0.06 Archaeplastida
GSVIVT01011947001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
GSVIVT01019699001 No alias RNA biosynthesis.transcriptional activation.B3... 0.03 Archaeplastida
GSVIVT01033902001 No alias RNA biosynthesis.transcriptional activation.B3... 0.04 Archaeplastida
LOC_Os01g49830.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
LOC_Os05g47650.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.09 Archaeplastida
LOC_Os06g01860.1 No alias transcription factor (RAV/NGATHA) 0.06 Archaeplastida
LOC_Os08g06120.1 No alias transcription factor (RAV/NGATHA) 0.05 Archaeplastida
LOC_Os10g39190.1 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
MA_10432625g0010 No alias transcription factor (AP2-RAV) 0.02 Archaeplastida
MA_161329g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_19420g0020 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_23673g0010 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
MA_246350g0010 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
MA_6373997g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_70029g0010 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Pp3c1_16700V3.1 No alias related to ABI3/VP1 1 0.04 Archaeplastida
Pp3c2_23660V3.1 No alias AP2/B3 transcription factor family protein 0.04 Archaeplastida
Solyc04g007000.2.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.02 Archaeplastida
Solyc05g009790.1.1 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.03 Archaeplastida
Solyc09g010230.2.1 No alias transcription factor (RAV/NGATHA) 0.02 Archaeplastida
Solyc10g083210.2.1 No alias transcription factor (RAV/NGATHA) 0.04 Archaeplastida
Zm00001e016956_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
Zm00001e024165_P001 No alias transcription factor (RAV/NGATHA) 0.05 Archaeplastida
Zm00001e032325_P001 No alias transcription factor (RAV/NGATHA). transcription factor (AP2-RAV) 0.04 Archaeplastida
Zm00001e038099_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e039393_P002 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida
Zm00001e040214_P001 No alias transcription factor (RAV/NGATHA) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003700 DNA-binding transcription factor activity IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016762 xyloglucan:xyloglucosyl transferase activity IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
CC GO:0048046 apoplast IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001471 AP2/ERF_dom 76 124
IPR003340 B3_DNA-bd 206 302
No external refs found!