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  5. Zm00001e026456_P001

Zm00001e026456_P001


Description : associated component RACK1 of SSU proteome


Gene families : OG0002844 (Archaeplastida) Phylogenetic Tree(s): OG0002844_tree ,
OG_05_0002983 (LandPlants) Phylogenetic Tree(s): OG_05_0002983_tree ,
OG_06_0003274 (SeedPlants) Phylogenetic Tree(s): OG_06_0003274_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026456_P001
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00105p00058690 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.small subunit... 0.14 Archaeplastida
AT1G18080 ATARCA, RACK1A, RACK1A_AT Transducin/WD40 repeat-like superfamily protein 0.14 Archaeplastida
AT1G48630 RACK1B_AT receptor for activated C kinase 1B 0.25 Archaeplastida
AT3G18130 RACK1C_AT receptor for activated C kinase 1C 0.22 Archaeplastida
Cpa|evm.model.tig00000169.6 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.13 Archaeplastida
Cre06.g278222 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
GSVIVT01008395001 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.23 Archaeplastida
Gb_33900 No alias associated component RACK1 of SSU proteome 0.05 Archaeplastida
LOC_Os01g49290.1 No alias associated component RACK1 of SSU proteome 0.33 Archaeplastida
LOC_Os05g47890.1 No alias associated component RACK1 of SSU proteome 0.17 Archaeplastida
MA_10435947g0010 No alias Guanine nucleotide-binding protein subunit beta-like... 0.11 Archaeplastida
Mp3g15630.1 No alias associated component RACK1 of SSU proteome 0.3 Archaeplastida
Pp3c16_13180V3.1 No alias receptor for activated C kinase 1B 0.15 Archaeplastida
Pp3c27_6040V3.1 No alias receptor for activated C kinase 1B 0.22 Archaeplastida
Pp3c5_770V3.1 No alias receptor for activated C kinase 1B 0.17 Archaeplastida
Smo266532 No alias Protein biosynthesis.cytosolic ribosome.small subunit... 0.18 Archaeplastida
Solyc03g119040.3.1 No alias associated component RACK1 of SSU proteome 0.19 Archaeplastida
Solyc06g069010.3.1 No alias associated component RACK1 of SSU proteome 0.22 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
MF GO:0008097 5S rRNA binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 302 326
IPR001680 WD40_repeat 10 47
IPR001680 WD40_repeat 67 103
IPR001680 WD40_repeat 110 145
IPR001680 WD40_repeat 203 237
IPR001680 WD40_repeat 250 277
IPR001680 WD40_repeat 162 195
No external refs found!