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  5. AT3G30540

AT3G30540


Description : Glycosyl hydrolase superfamily protein


Gene families : OG0000315 (Archaeplastida) Phylogenetic Tree(s): OG0000315_tree ,
OG_05_0000179 (LandPlants) Phylogenetic Tree(s): OG_05_0000179_tree ,
OG_06_0019943 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G30540
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00136900 evm_27.TU.AmTr_v1... Cell wall.hemicellulose.heteromannan.modification and... 0.03 Archaeplastida
GSVIVT01030165001 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.04 Archaeplastida
GSVIVT01037216001 No alias Cell wall.hemicellulose.heteromannan.modification and... 0.03 Archaeplastida
MA_10432193g0010 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
MA_111906g0010 No alias endo-beta-1,4-mannanase 0.04 Archaeplastida
MA_6558g0010 No alias endo-beta-1,4-mannanase 0.02 Archaeplastida
Mp8g06310.1 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida
Mp8g13380.1 No alias endo-beta-1,4-mannanase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP Neighborhood
BP GO:0001708 cell fate specification IEP Neighborhood
BP GO:0006825 copper ion transport IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009556 microsporogenesis IEP Neighborhood
BP GO:0009809 lignin biosynthetic process IEP Neighborhood
BP GO:0009913 epidermal cell differentiation IEP Neighborhood
BP GO:0010091 trichome branching IEP Neighborhood
BP GO:0030855 epithelial cell differentiation IEP Neighborhood
BP GO:0034293 sexual sporulation IEP Neighborhood
BP GO:0043934 sporulation IEP Neighborhood
BP GO:0048236 plant-type sporogenesis IEP Neighborhood
BP GO:0051321 meiotic cell cycle IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR001547 Glyco_hydro_5 76 293
No external refs found!