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  5. Zm00001e026661_P002

Zm00001e026661_P002


Description : RGG repeats nuclear RNA binding protein A (Fragment) OS=Nicotiana tabacum (sp|q9sq56|rgga_tobac : 112.0)


Gene families : OG0002128 (Archaeplastida) Phylogenetic Tree(s): OG0002128_tree ,
OG_05_0001404 (LandPlants) Phylogenetic Tree(s): OG_05_0001404_tree ,
OG_06_0002073 (SeedPlants) Phylogenetic Tree(s): OG_06_0002073_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e026661_P002
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00111p00140620 evm_27.TU.AmTr_v1... RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 Archaeplastida
AT4G17520 No alias Hyaluronan / mRNA binding family 0.07 Archaeplastida
GSVIVT01018290001 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os01g41880.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.11 Archaeplastida
LOC_Os01g52390.1 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.08 Archaeplastida
MA_10428060g0020 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.03 Archaeplastida
MA_9567870g0010 No alias RGG repeats nuclear RNA binding protein A (Fragment)... 0.04 Archaeplastida
Pp3c1_6130V3.1 No alias Hyaluronan / mRNA binding family 0.02 Archaeplastida
Pp3c7_26560V3.1 No alias Hyaluronan / mRNA binding family 0.02 Archaeplastida
Solyc01g090190.3.1 No alias RGG repeats nuclear RNA binding protein A OS=Arabidopsis... 0.03 Archaeplastida
Solyc08g007220.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030688 preribosome, small subunit precursor IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR019084 Stm1-like_N 1 66
IPR006861 HABP4_PAIRBP1-bd 150 262
No external refs found!