AT3G42660


Description : transducin family protein / WD-40 repeat family protein


Gene families : OG0006073 (Archaeplastida) Phylogenetic Tree(s): OG0006073_tree ,
OG_05_0007953 (LandPlants) Phylogenetic Tree(s): OG_05_0007953_tree ,
OG_06_0008508 (SeedPlants) Phylogenetic Tree(s): OG_06_0008508_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G42660
Cluster HCCA: Cluster_145

Target Alias Description ECC score Gene Family Method Actions
Solyc03g114690.4.1 No alias LHP1-regulatory component ELP1 of PRC1 histone... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0006260 DNA replication RCA Interproscan
BP GO:0006261 DNA-dependent DNA replication RCA Interproscan
BP GO:0006270 DNA replication initiation RCA Interproscan
BP GO:0006275 regulation of DNA replication RCA Interproscan
BP GO:0006306 DNA methylation RCA Interproscan
BP GO:0008150 biological_process ND Interproscan
BP GO:0008283 cell proliferation RCA Interproscan
BP GO:0009909 regulation of flower development RCA Interproscan
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle RCA Interproscan
BP GO:0016458 gene silencing RCA Interproscan
BP GO:0016570 histone modification RCA Interproscan
BP GO:0034968 histone lysine methylation RCA Interproscan
BP GO:0048449 floral organ formation RCA Interproscan
BP GO:0051567 histone H3-K9 methylation RCA Interproscan
BP GO:0051726 regulation of cell cycle RCA Interproscan
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
BP GO:0000280 nuclear division IEP Neighborhood
BP GO:0000394 RNA splicing, via endonucleolytic cleavage and ligation IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000791 euchromatin IEP Neighborhood
CC GO:0000792 heterochromatin IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0002238 response to molecule of fungal origin IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0002376 immune system process IEP Neighborhood
BP GO:0003002 regionalization IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0005200 structural constituent of cytoskeleton IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
CC GO:0005663 DNA replication factor C complex IEP Neighborhood
CC GO:0005719 nuclear euchromatin IEP Neighborhood
CC GO:0005720 nuclear heterochromatin IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005819 spindle IEP Neighborhood
CC GO:0005874 microtubule IEP Neighborhood
CC GO:0005881 cytoplasmic microtubule IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006338 chromatin remodeling IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006366 transcription by RNA polymerase II IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP Neighborhood
BP GO:0006952 defense response IEP Neighborhood
BP GO:0006955 immune response IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0006997 nucleus organization IEP Neighborhood
BP GO:0007000 nucleolus organization IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
CC GO:0008023 transcription elongation factor complex IEP Neighborhood
BP GO:0008064 regulation of actin polymerization or depolymerization IEP Neighborhood
MF GO:0008327 methyl-CpG binding IEP Neighborhood
BP GO:0008356 asymmetric cell division IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
CC GO:0009504 cell plate IEP Neighborhood
CC GO:0009524 phragmoplast IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
CC GO:0009574 preprophase band IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009607 response to biotic stimulus IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009653 anatomical structure morphogenesis IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009887 animal organ morphogenesis IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010016 shoot system morphogenesis IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010051 xylem and phloem pattern formation IEP Neighborhood
BP GO:0010072 primary shoot apical meristem specification IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
CC GO:0010369 chromocenter IEP Neighborhood
MF GO:0010385 double-stranded methylated DNA binding IEP Neighborhood
BP GO:0010424 DNA methylation on cytosine within a CG sequence IEP Neighborhood
MF GO:0010428 methyl-CpNpG binding IEP Neighborhood
MF GO:0010429 methyl-CpNpN binding IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010586 miRNA metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010638 positive regulation of organelle organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016572 histone phosphorylation IEP Neighborhood
BP GO:0019941 modification-dependent protein catabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022403 cell cycle phase IEP Neighborhood
BP GO:0022412 cellular process involved in reproduction in multicellular organism IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
BP GO:0030154 cell differentiation IEP Neighborhood
MF GO:0030371 translation repressor activity IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
BP GO:0030832 regulation of actin filament length IEP Neighborhood
BP GO:0030833 regulation of actin filament polymerization IEP Neighborhood
BP GO:0030838 positive regulation of actin filament polymerization IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0031055 chromatin remodeling at centromere IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031334 positive regulation of protein complex assembly IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0031508 pericentric heterochromatin assembly IEP Neighborhood
BP GO:0031935 regulation of chromatin silencing IEP Neighborhood
BP GO:0031937 positive regulation of chromatin silencing IEP Neighborhood
CC GO:0032153 cell division site IEP Neighborhood
BP GO:0032271 regulation of protein polymerization IEP Neighborhood
BP GO:0032273 positive regulation of protein polymerization IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
BP GO:0032535 regulation of cellular component size IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032776 DNA methylation on cytosine IEP Neighborhood
BP GO:0032956 regulation of actin cytoskeleton organization IEP Neighborhood
BP GO:0032970 regulation of actin filament-based process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0033043 regulation of organelle organization IEP Neighborhood
BP GO:0035019 somatic stem cell population maintenance IEP Neighborhood
CC GO:0035101 FACT complex IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
MF GO:0035198 miRNA binding IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042023 DNA endoreduplication IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043207 response to external biotic stimulus IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043254 regulation of protein complex assembly IEP Neighborhood
BP GO:0043632 modification-dependent macromolecule catabolic process IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044087 regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044089 positive regulation of cellular component biogenesis IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0044786 cell cycle DNA replication IEP Neighborhood
BP GO:0044848 biological phase IEP Neighborhood
BP GO:0045010 actin nucleation IEP Neighborhood
BP GO:0045087 innate immune response IEP Neighborhood
MF GO:0045182 translation regulator activity IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
CC GO:0046658 anchored component of plasma membrane IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
BP GO:0048364 root development IEP Neighborhood
BP GO:0048439 flower morphogenesis IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048528 post-embryonic root development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0048869 cellular developmental process IEP Neighborhood
BP GO:0051054 positive regulation of DNA metabolic process IEP Neighborhood
BP GO:0051128 regulation of cellular component organization IEP Neighborhood
BP GO:0051130 positive regulation of cellular component organization IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051301 cell division IEP Neighborhood
BP GO:0051322 anaphase IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051495 positive regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051704 multi-organism process IEP Neighborhood
BP GO:0051707 response to other organism IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052386 cell wall thickening IEP Neighborhood
BP GO:0052543 callose deposition in cell wall IEP Neighborhood
CC GO:0055028 cortical microtubule IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0060968 regulation of gene silencing IEP Neighborhood
CC GO:0061695 transferase complex, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0061980 regulatory RNA binding IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
CC GO:0072686 mitotic spindle IEP Neighborhood
BP GO:0090066 regulation of anatomical structure size IEP Neighborhood
BP GO:0090308 regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090309 positive regulation of methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0090421 embryonic meristem initiation IEP Neighborhood
BP GO:0090696 post-embryonic plant organ development IEP Neighborhood
BP GO:0090698 post-embryonic plant morphogenesis IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:0098542 defense response to other organism IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
BP GO:0099402 plant organ development IEP Neighborhood
BP GO:0110053 regulation of actin filament organization IEP Neighborhood
BP GO:1902183 regulation of shoot apical meristem development IEP Neighborhood
BP GO:1902275 regulation of chromatin organization IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
CC GO:1902494 catalytic complex IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1902903 regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1902905 positive regulation of supramolecular fiber organization IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905269 positive regulation of chromatin organization IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
BP GO:2001252 positive regulation of chromosome organization IEP Neighborhood
InterPro domains Description Start Stop
IPR022100 Mcl1_mid 432 714
IPR001680 WD40_repeat 57 89
IPR001680 WD40_repeat 137 173
IPR024977 Apc4_WD40_dom 216 288
No external refs found!