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  5. Zm00001e027562_P001

Zm00001e027562_P001


Description : transcription factor (KNOX)


Gene families : OG0000263 (Archaeplastida) Phylogenetic Tree(s): OG0000263_tree ,
OG_05_0000128 (LandPlants) Phylogenetic Tree(s): OG_05_0000128_tree ,
OG_06_0003089 (SeedPlants) Phylogenetic Tree(s): OG_06_0003089_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e027562_P001
Cluster HCCA: Cluster_163

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00026p00162850 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
AMTR_s00045p00169620 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
AMTR_s00085p00165180 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
AT1G23380 KNAT6, KNAT6L, KNAT6S KNOTTED1-like homeobox gene 6 0.04 Archaeplastida
AT1G62360 BUM1, SHL, STM,... KNOX/ELK homeobox transcription factor 0.02 Archaeplastida
AT1G70510 KNAT2, ATK1 KNOTTED-like from Arabidopsis thaliana 2 0.05 Archaeplastida
AT4G08150 BP, BP1, KNAT1 KNOTTED-like from Arabidopsis thaliana 0.04 Archaeplastida
AT5G11060 KNAT4 KNOTTED1-like homeobox gene 4 0.03 Archaeplastida
AT5G25220 KNAT3 KNOTTED1-like homeobox gene 3 0.04 Archaeplastida
GSVIVT01004811001 No alias RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
GSVIVT01007715001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01009273001 No alias RNA biosynthesis.transcriptional activation.HB... 0.06 Archaeplastida
GSVIVT01013790001 No alias RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
GSVIVT01019880001 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
GSVIVT01030488001 No alias RNA biosynthesis.transcriptional activation.HB... 0.03 Archaeplastida
GSVIVT01031241001 No alias RNA biosynthesis.transcriptional activation.HB... 0.08 Archaeplastida
GSVIVT01035921001 No alias RNA biosynthesis.transcriptional activation.HB... 0.04 Archaeplastida
Gb_00573 No alias transcription factor (KNOX) 0.02 Archaeplastida
Gb_10887 No alias transcription factor (KNOX) 0.04 Archaeplastida
Gb_14470 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os01g19694.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g03164.2 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os03g47016.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g47022.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os03g51690.2 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os03g51710.1 No alias transcription factor (KNOX) 0.07 Archaeplastida
LOC_Os03g56140.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
LOC_Os05g03884.1 No alias transcription factor (KNOX) 0.09 Archaeplastida
LOC_Os06g43860.1 No alias transcription factor (KNOX) 0.02 Archaeplastida
LOC_Os07g03770.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
LOC_Os08g19650.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
MA_10428446g0010 No alias transcription factor (KNOX) 0.02 Archaeplastida
MA_114226g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_3582g0010 No alias transcription factor (KNOX) 0.03 Archaeplastida
Pp3c5_26440V3.1 No alias KNOTTED1-like homeobox gene 3 0.02 Archaeplastida
Pp3c6_1550V3.1 No alias KNOTTED1-like homeobox gene 3 0.04 Archaeplastida
Smo159366 No alias RNA biosynthesis.transcriptional activation.HB... 0.05 Archaeplastida
Smo90744 No alias RNA biosynthesis.transcriptional activation.HB... 0.02 Archaeplastida
Solyc01g100510.4.1 No alias transcription factor (KNOX) 0.04 Archaeplastida
Solyc02g081120.4.1 No alias transcription factor (KNOX) 0.08 Archaeplastida
Solyc04g077210.3.1 No alias transcription factor (KNOX) 0.07 Archaeplastida
Solyc05g005090.4.1 No alias transcription factor (KNOX) 0.08 Archaeplastida
Solyc07g007120.3.1 No alias transcription factor (KNOX) 0.03 Archaeplastida
Zm00001e005547_P001 No alias transcription factor (KNOX) 0.09 Archaeplastida
Zm00001e039044_P001 No alias transcription factor (KNOX) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
CC GO:0005634 nucleus IEA Interproscan
BP GO:0006355 regulation of transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity IEP Neighborhood
MF GO:0005102 signaling receptor binding IEP Neighborhood
CC GO:0005576 extracellular region IEP Neighborhood
MF GO:0008083 growth factor activity IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0030545 receptor regulator activity IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
MF GO:0048018 receptor ligand activity IEP Neighborhood
MF GO:0061630 ubiquitin protein ligase activity IEP Neighborhood
MF GO:0061659 ubiquitin-like protein ligase activity IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005540 KNOX1 53 92
IPR005539 ELK_dom 212 233
IPR008422 Homeobox_KN_domain 252 291
IPR005541 KNOX2 103 149
No external refs found!