AT3G43980

Description : Ribosomal protein S14p/S29e family protein

Gene families : OG0004664 (Archaeplastida) Phylogenetic Tree(s): OG0004664_tree ,
OG_05_0003789 (LandPlants) Phylogenetic Tree(s): OG_05_0003789_tree ,
OG_06_0004187 (SeedPlants) Phylogenetic Tree(s): OG_06_0004187_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G43980
Cluster	HCCA: Cluster_25

Target	Alias	Description	ECC score	Gene Family Method
Cre08.g358556	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.02	Archaeplastida
GSVIVT01015056001	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	Archaeplastida
LOC_Os03g56241.1	No alias	component RPS29 of SSU proteome	0.1	Archaeplastida
LOC_Os11g41610.1	No alias	component RPS29 of SSU proteome	0.15	Archaeplastida
Mp5g15120.1	No alias	component RPS29 of SSU proteome	0.03	Archaeplastida
Mp8g03910.1	No alias	component RPS29 of SSU proteome	0.04	Archaeplastida
Pp3c2_6730V3.1	No alias	Ribosomal protein S14p/S29e family protein	0.02	Archaeplastida
Solyc06g073430.4.1	No alias	component RPS29 of SSU proteome	0.09	Archaeplastida
Solyc11g020877.1.1	No alias	component RPS29 of SSU proteome	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	ISS	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	ISS	Interproscan
BP	GO:0006412	translation	ISS	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
CC	GO:0015935	small ribosomal subunit	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
CC	GO:0022627	cytosolic small ribosomal subunit	IDA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	cellular amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
CC	GO:0044391	ribosomal subunit	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044445	cytosolic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000152	nuclear ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0001510	RNA methylation	IEP	Neighborhood
CC	GO:0005680	anaphase-promoting complex	IEP	Neighborhood
CC	GO:0005739	mitochondrion	IEP	Neighborhood
CC	GO:0005740	mitochondrial envelope	IEP	Neighborhood
CC	GO:0005747	mitochondrial respiratory chain complex I	IEP	Neighborhood
CC	GO:0005750	mitochondrial respiratory chain complex III	IEP	Neighborhood
CC	GO:0005753	mitochondrial proton-transporting ATP synthase complex	IEP	Neighborhood
BP	GO:0006122	mitochondrial electron transport, ubiquinol to cytochrome c	IEP	Neighborhood
BP	GO:0007163	establishment or maintenance of cell polarity	IEP	Neighborhood
MF	GO:0008121	ubiquinol-cytochrome-c reductase activity	IEP	Neighborhood
BP	GO:0008154	actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0009853	photorespiration	IEP	Neighborhood
BP	GO:0010229	inflorescence development	IEP	Neighborhood
CC	GO:0016469	proton-transporting two-sector ATPase complex	IEP	Neighborhood
MF	GO:0016679	oxidoreductase activity, acting on diphenols and related substances as donors	IEP	Neighborhood
MF	GO:0016681	oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor	IEP	Neighborhood
BP	GO:0022904	respiratory electron transport chain	IEP	Neighborhood
BP	GO:0030041	actin filament polymerization	IEP	Neighborhood
CC	GO:0030964	NADH dehydrogenase complex	IEP	Neighborhood
CC	GO:0031209	SCAR complex	IEP	Neighborhood
BP	GO:0043094	cellular metabolic compound salvage	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044429	mitochondrial part	IEP	Neighborhood
CC	GO:0044455	mitochondrial membrane part	IEP	Neighborhood
CC	GO:0045259	proton-transporting ATP synthase complex	IEP	Neighborhood
CC	GO:0045271	respiratory chain complex I	IEP	Neighborhood
CC	GO:0045275	respiratory chain complex III	IEP	Neighborhood
BP	GO:0051258	protein polymerization	IEP	Neighborhood
CC	GO:0070069	cytochrome complex	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
CC	GO:0098796	membrane protein complex	IEP	Neighborhood
CC	GO:0098798	mitochondrial protein complex	IEP	Neighborhood
CC	GO:0098800	inner mitochondrial membrane protein complex	IEP	Neighborhood
CC	GO:0098803	respiratory chain complex	IEP	Neighborhood
CC	GO:1902494	catalytic complex	IEP	Neighborhood
CC	GO:1990204	oxidoreductase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001209	Ribosomal_S14	7	56

External Links

No external refs found!

AT3G43980

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation