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  5. Zm00001e028504_P001

Zm00001e028504_P001


Description : component SNAPC3/SRD2 of SNAP snRNA transcription factor complex


Gene families : OG0007292 (Archaeplastida) Phylogenetic Tree(s): OG0007292_tree ,
OG_05_0007578 (LandPlants) Phylogenetic Tree(s): OG_05_0007578_tree ,
OG_06_0010624 (SeedPlants) Phylogenetic Tree(s): OG_06_0010624_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e028504_P001
Cluster HCCA: Cluster_3

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00163p00055500 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G65230 No alias Uncharacterized conserved protein (DUF2358) 0.11 Archaeplastida
GSVIVT01019072001 No alias No description available 0.13 Archaeplastida
Gb_14335 No alias no hits & (original description: none) 0.08 Archaeplastida
LOC_Os01g68450.1 No alias no hits & (original description: none) 0.1 Archaeplastida
Mp2g05350.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Pp3c15_10950V3.1 No alias Uncharacterized conserved protein (DUF2358) 0.09 Archaeplastida
Pp3c9_3810V3.1 No alias Uncharacterized conserved protein (DUF2358) 0.04 Archaeplastida
Smo83381 No alias No description available 0.02 Archaeplastida
Solyc04g056580.3.1 No alias no hits & (original description: none) 0.14 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004602 glutathione peroxidase activity IEP Neighborhood
MF GO:0004611 phosphoenolpyruvate carboxykinase activity IEP Neighborhood
BP GO:0006099 tricarboxylic acid cycle IEP Neighborhood
BP GO:0006101 citrate metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
MF GO:0008113 peptide-methionine (S)-S-oxide reductase activity IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008942 nitrite reductase [NAD(P)H] activity IEP Neighborhood
MF GO:0008964 phosphoenolpyruvate carboxylase activity IEP Neighborhood
MF GO:0009055 electron transfer activity IEP Neighborhood
MF GO:0010277 chlorophyllide a oxygenase [overall] activity IEP Neighborhood
BP GO:0015977 carbon fixation IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016667 oxidoreductase activity, acting on a sulfur group of donors IEP Neighborhood
MF GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor IEP Neighborhood
MF GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases) IEP Neighborhood
MF GO:0016730 oxidoreductase activity, acting on iron-sulfur proteins as donors IEP Neighborhood
BP GO:0016999 antibiotic metabolic process IEP Neighborhood
BP GO:0017004 cytochrome complex assembly IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
MF GO:0033743 peptide-methionine (R)-S-oxide reductase activity IEP Neighborhood
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051537 2 iron, 2 sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0072350 tricarboxylic acid metabolic process IEP Neighborhood
MF GO:0098809 nitrite reductase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR018790 DUF2358 619 691
IPR022042 snRNA-activating_su3 301 468
No external refs found!