Zm00001e029170_P001

Description : transcription factor (MADS/AGL)

Gene families : OG0000011 (Archaeplastida) Phylogenetic Tree(s): OG0000011_tree ,
OG_05_0009083 (LandPlants) Phylogenetic Tree(s): OG_05_0009083_tree ,
OG_06_0005290 (SeedPlants) Phylogenetic Tree(s): OG_06_0005290_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e029170_P001
Cluster	HCCA: Cluster_89

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00217560	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MADS box...	0.02	Archaeplastida
AMTR_s00071p00198520	evm_27.TU.AmTr_v1...	Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G69120	AGL7, AP1	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
AT2G14210	ANR1, AGL44	AGAMOUS-like 44	0.03	Archaeplastida
AT3G30260	AGL79	AGAMOUS-like 79	0.02	Archaeplastida
Cpa\|evm.model.tig00000944.9	No alias	RNA biosynthesis.transcriptional activation.MADS box...	0.01	Archaeplastida
GSVIVT01015649001	No alias	No description available	0.05	Archaeplastida
LOC_Os03g08754.1	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
MA_16629g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_44428g0010	No alias	transcription factor (MADS/AGL)	0.02	Archaeplastida
MA_45349g0010	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
MA_9284799g0010	No alias	transcription factor (MADS/AGL)	0.04	Archaeplastida
Pp3c12_22500V3.1	No alias	K-box region and MADS-box transcription factor family protein	0.02	Archaeplastida
Pp3c14_22180V3.1	No alias	AGAMOUS-like 104	0.02	Archaeplastida
Pp3c17_24040V3.1	No alias	AGAMOUS-like 66	0.01	Archaeplastida
Solyc03g019710.3.1	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Solyc10g017640.1.1	No alias	transcription factor (MADS/AGL)	0.07	Archaeplastida
Solyc10g044965.1.1	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida
Zm00001e012026_P002	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e015924_P003	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e018811_P001	No alias	transcription factor (MADS/AGL)	0.08	Archaeplastida
Zm00001e019057_P001	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e023825_P002	No alias	transcription factor (MADS/AGL)	0.06	Archaeplastida
Zm00001e027034_P001	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e035509_P002	No alias	transcription factor (MADS/AGL)	0.03	Archaeplastida
Zm00001e038096_P002	No alias	transcription factor (MADS/AGL)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046983	protein dimerization activity	IEA	Interproscan
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
MF	GO:0015399	primary active transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015405	P-P-bond-hydrolysis-driven transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016887	ATPase activity	IEP	Neighborhood
MF	GO:0022804	active transmembrane transporter activity	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
MF	GO:0042623	ATPase activity, coupled	IEP	Neighborhood
MF	GO:0042626	ATPase activity, coupled to transmembrane movement of substances	IEP	Neighborhood
MF	GO:0043492	ATPase activity, coupled to movement of substances	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002487	TF_Kbox	87	172
IPR002100	TF_MADSbox	10	55

External Links

No external refs found!

Zm00001e029170_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation