AT3G44880 (ACD1, PAO, LLS1)

Aliases : ACD1, PAO, LLS1

Description : Pheophorbide a oxygenase family protein with Rieske [2Fe-2S] domain

Gene families : OG0001120 (Archaeplastida) Phylogenetic Tree(s): OG0001120_tree ,
OG_05_0006702 (LandPlants) Phylogenetic Tree(s): OG_05_0006702_tree ,
OG_06_0006835 (SeedPlants) Phylogenetic Tree(s): OG_06_0006835_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G44880
Cluster	HCCA: Cluster_205

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00068p00127460	evm_27.TU.AmTr_v1...	Protochlorophyllide-dependent translocon component 52,...	0.04	Archaeplastida
AMTR_s00140p00074640	evm_27.TU.AmTr_v1...	Coenzyme metabolism.tetrapyrrol biosynthesis.chlorophyll...	0.04	Archaeplastida
Cpa\|evm.model.tig00000681.17	No alias	Protein TIC 55, chloroplastic OS=Arabidopsis thaliana	0.02	Archaeplastida
Gb_37383	No alias	Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis...	0.07	Archaeplastida
Gb_37385	No alias	Pheophorbide a oxygenase, chloroplastic OS=Arabidopsis...	0.07	Archaeplastida
LOC_Os03g05310.1	No alias	pheophorbide a oxygenase (PAO)	0.09	Archaeplastida
LOC_Os03g59110.1	No alias	Protochlorophyllide-dependent translocon component 52,...	0.04	Archaeplastida
MA_10436339g0010	No alias	pheophorbide a oxygenase (PAO)	0.02	Archaeplastida
Mp6g13750.1	No alias	Protochlorophyllide-dependent translocon component 52,...	0.02	Archaeplastida
Mp7g01120.1	No alias	pheophorbide a oxygenase (PAO)	0.03	Archaeplastida
Pp3c1_40790V3.1	No alias	Pheophorbide a oxygenase family protein with Rieske...	0.02	Archaeplastida
Pp3c3_19130V3.1	No alias	Pheophorbide a oxygenase family protein with Rieske...	0.03	Archaeplastida
Solyc11g066440.2.1	No alias	pheophorbide a oxygenase (PAO)	0.03	Archaeplastida
Zm00001e000376_P001	No alias	pheophorbide a oxygenase (PAO)	0.12	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0002376	immune system process	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006778	porphyrin-containing compound metabolic process	None	Extended
BP	GO:0006787	porphyrin-containing compound catabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0007275	multicellular organism development	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008219	cell death	IMP	Interproscan
BP	GO:0009056	catabolic process	None	Extended
CC	GO:0009507	chloroplast	IDA	Interproscan
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009526	plastid envelope	None	Extended
CC	GO:0009528	plastid inner membrane	None	Extended
CC	GO:0009534	chloroplast thylakoid	IDA	Interproscan
CC	GO:0009536	plastid	None	Extended
CC	GO:0009579	thylakoid	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009617	response to bacterium	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009668	plastid membrane organization	None	Extended
CC	GO:0009706	chloroplast inner membrane	TAS	Interproscan
BP	GO:0009790	embryo development	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009793	embryo development ending in seed dormancy	RCA	Interproscan
BP	GO:0009814	defense response, incompatible interaction	None	Extended
BP	GO:0009816	defense response to bacterium, incompatible interaction	IMP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009908	flower development	IMP	Interproscan
CC	GO:0009941	chloroplast envelope	IDA	Interproscan
BP	GO:0009965	leaf morphogenesis	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010027	thylakoid membrane organization	RCA	Interproscan
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010228	vegetative to reproductive phase transition of meristem	RCA	Interproscan
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0015994	chlorophyll metabolic process	None	Extended
BP	GO:0015996	chlorophyll catabolic process	IMP	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016226	iron-sulfur cluster assembly	RCA	Interproscan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016730	oxidoreductase activity, acting on iron-sulfur proteins as donors	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
CC	GO:0019866	organelle inner membrane	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0030154	cell differentiation	RCA	Interproscan
CC	GO:0031090	organelle membrane	None	Extended
BP	GO:0031163	metallo-sulfur cluster assembly	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
CC	GO:0031967	organelle envelope	None	Extended
CC	GO:0031969	chloroplast membrane	None	Extended
CC	GO:0031975	envelope	None	Extended
CC	GO:0031976	plastid thylakoid	None	Extended
CC	GO:0031984	organelle subcompartment	None	Extended
MF	GO:0032441	pheophorbide a oxygenase activity	IDA	Interproscan
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033013	tetrapyrrole metabolic process	None	Extended
BP	GO:0033015	tetrapyrrole catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
CC	GO:0042170	plastid membrane	None	Extended
BP	GO:0042440	pigment metabolic process	None	Extended
BP	GO:0042742	defense response to bacterium	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044434	chloroplast part	None	Extended
CC	GO:0044435	plastid part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	RCA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046149	pigment catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
MF	GO:0048037	cofactor binding	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048481	plant ovule development	RCA	Interproscan
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051186	cofactor metabolic process	None	Extended
BP	GO:0051187	cofactor catabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
MF	GO:0051536	iron-sulfur cluster binding	ISS	Interproscan
MF	GO:0051540	metal cluster binding	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0061024	membrane organization	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0099402	plant organ development	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
MF	GO:0000257	nitrilase activity	IEP	Neighborhood
MF	GO:0000295	adenine nucleotide transmembrane transporter activity	IEP	Neighborhood
BP	GO:0000303	response to superoxide	IEP	Neighborhood
BP	GO:0000305	response to oxygen radical	IEP	Neighborhood
BP	GO:0000373	Group II intron splicing	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
MF	GO:0003951	NAD+ kinase activity	IEP	Neighborhood
MF	GO:0004022	alcohol dehydrogenase (NAD) activity	IEP	Neighborhood
MF	GO:0004031	aldehyde oxidase activity	IEP	Neighborhood
MF	GO:0004301	epoxide hydrolase activity	IEP	Neighborhood
MF	GO:0005346	purine ribonucleotide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005347	ATP transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005432	calcium:sodium antiporter activity	IEP	Neighborhood
MF	GO:0005471	ATP:ADP antiporter activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
BP	GO:0006664	glycolipid metabolic process	IEP	Neighborhood
BP	GO:0006970	response to osmotic stress	IEP	Neighborhood
BP	GO:0006972	hyperosmotic response	IEP	Neighborhood
BP	GO:0007568	aging	IEP	Neighborhood
MF	GO:0008144	drug binding	IEP	Neighborhood
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	Neighborhood
MF	GO:0008233	peptidase activity	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
BP	GO:0009247	glycolipid biosynthetic process	IEP	Neighborhood
CC	GO:0009368	endopeptidase Clp complex	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
CC	GO:0009532	plastid stroma	IEP	Neighborhood
CC	GO:0009570	chloroplast stroma	IEP	Neighborhood
BP	GO:0009611	response to wounding	IEP	Neighborhood
BP	GO:0009628	response to abiotic stimulus	IEP	Neighborhood
BP	GO:0009642	response to light intensity	IEP	Neighborhood
BP	GO:0009646	response to absence of light	IEP	Neighborhood
BP	GO:0009651	response to salt stress	IEP	Neighborhood
BP	GO:0009658	chloroplast organization	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009753	response to jasmonic acid	IEP	Neighborhood
BP	GO:0009808	lignin metabolic process	IEP	Neighborhood
BP	GO:0009809	lignin biosynthetic process	IEP	Neighborhood
MF	GO:0009815	1-aminocyclopropane-1-carboxylate oxidase activity	IEP	Neighborhood
CC	GO:0009840	chloroplastic endopeptidase Clp complex	IEP	Neighborhood
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0009968	negative regulation of signal transduction	IEP	Neighborhood
BP	GO:0010033	response to organic substance	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010044	response to aluminum ion	IEP	Neighborhood
BP	GO:0010191	mucilage metabolic process	IEP	Neighborhood
BP	GO:0010192	mucilage biosynthetic process	IEP	Neighborhood
BP	GO:0010201	response to continuous far red light stimulus by the high-irradiance response system	IEP	Neighborhood
BP	GO:0010232	vascular transport	IEP	Neighborhood
BP	GO:0010233	phloem transport	IEP	Neighborhood
BP	GO:0010260	animal organ senescence	IEP	Neighborhood
MF	GO:0010293	abscisic aldehyde oxidase activity	IEP	Neighborhood
BP	GO:0010304	PSII associated light-harvesting complex II catabolic process	IEP	Neighborhood
BP	GO:0010380	regulation of chlorophyll biosynthetic process	IEP	Neighborhood
BP	GO:0010648	negative regulation of cell communication	IEP	Neighborhood
MF	GO:0015020	glucuronosyltransferase activity	IEP	Neighborhood
MF	GO:0015215	nucleotide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015216	purine nucleotide transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015217	ADP transmembrane transporter activity	IEP	Neighborhood
MF	GO:0015368	calcium:cation antiporter activity	IEP	Neighborhood
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	IEP	Neighborhood
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016623	oxidoreductase activity, acting on the aldehyde or oxo group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0016787	hydrolase activity	IEP	Neighborhood
MF	GO:0016801	hydrolase activity, acting on ether bonds	IEP	Neighborhood
MF	GO:0016803	ether hydrolase activity	IEP	Neighborhood
MF	GO:0016815	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in nitriles	IEP	Neighborhood
BP	GO:0016999	antibiotic metabolic process	IEP	Neighborhood
BP	GO:0017001	antibiotic catabolic process	IEP	Neighborhood
MF	GO:0018488	aryl-aldehyde oxidase activity	IEP	Neighborhood
MF	GO:0018822	nitrile hydratase activity	IEP	Neighborhood
BP	GO:0019363	pyridine nucleotide biosynthetic process	IEP	Neighborhood
BP	GO:0019374	galactolipid metabolic process	IEP	Neighborhood
BP	GO:0019375	galactolipid biosynthetic process	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0023057	negative regulation of signaling	IEP	Neighborhood
BP	GO:0030163	protein catabolic process	IEP	Neighborhood
BP	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0031625	ubiquitin protein ligase binding	IEP	Neighborhood
CC	GO:0031897	Tic complex	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0034214	protein hexamerization	IEP	Neighborhood
MF	GO:0034256	chlorophyll(ide) b reductase activity	IEP	Neighborhood
MF	GO:0036094	small molecule binding	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0042221	response to chemical	IEP	Neighborhood
BP	GO:0042538	hyperosmotic salinity response	IEP	Neighborhood
BP	GO:0042631	cellular response to water deprivation	IEP	Neighborhood
BP	GO:0042737	drug catabolic process	IEP	Neighborhood
BP	GO:0042743	hydrogen peroxide metabolic process	IEP	Neighborhood
BP	GO:0042744	hydrogen peroxide catabolic process	IEP	Neighborhood
MF	GO:0042802	identical protein binding	IEP	Neighborhood
MF	GO:0042803	protein homodimerization activity	IEP	Neighborhood
BP	GO:0044257	cellular protein catabolic process	IEP	Neighborhood
MF	GO:0044389	ubiquitin-like protein ligase binding	IEP	Neighborhood
BP	GO:0045037	protein import into chloroplast stroma	IEP	Neighborhood
MF	GO:0045551	cinnamyl-alcohol dehydrogenase activity	IEP	Neighborhood
BP	GO:0045962	positive regulation of development, heterochronic	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
BP	GO:0048354	mucilage biosynthetic process involved in seed coat development	IEP	Neighborhood
BP	GO:0048359	mucilage metabolic process involved in seed coat development	IEP	Neighborhood
CC	GO:0048471	perinuclear region of cytoplasm	IEP	Neighborhood
BP	GO:0048513	animal organ development	IEP	Neighborhood
MF	GO:0050302	indole-3-acetaldehyde oxidase activity	IEP	Neighborhood
BP	GO:0051781	positive regulation of cell division	IEP	Neighborhood
BP	GO:0055078	sodium ion homeostasis	IEP	Neighborhood
MF	GO:0070011	peptidase activity, acting on L-amino acid peptides	IEP	Neighborhood
BP	GO:0070887	cellular response to chemical stimulus	IEP	Neighborhood
BP	GO:0071229	cellular response to acid chemical	IEP	Neighborhood
BP	GO:0071365	cellular response to auxin stimulus	IEP	Neighborhood
BP	GO:0071462	cellular response to water stimulus	IEP	Neighborhood
BP	GO:0072525	pyridine-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0072593	reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:0080036	regulation of cytokinin-activated signaling pathway	IEP	Neighborhood
BP	GO:0080037	negative regulation of cytokinin-activated signaling pathway	IEP	Neighborhood
MF	GO:0080061	indole-3-acetonitrile nitrilase activity	IEP	Neighborhood
MF	GO:0080109	indole-3-acetonitrile nitrile hydratase activity	IEP	Neighborhood
MF	GO:0080124	pheophytinase activity	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
MF	GO:0099516	ion antiporter activity	IEP	Neighborhood
BP	GO:1901463	regulation of tetrapyrrole biosynthetic process	IEP	Neighborhood
BP	GO:1901700	response to oxygen-containing compound	IEP	Neighborhood
BP	GO:1903509	liposaccharide metabolic process	IEP	Neighborhood
BP	GO:2000762	regulation of phenylpropanoid metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR017941	Rieske_2Fe-2S	87	170
IPR013626	PaO	296	390

External Links

No external refs found!

AT3G44880 (ACD1, PAO, LLS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation