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  5. Zm00001e029696_P001

Zm00001e029696_P001


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029696_P001
Cluster HCCA: Cluster_329

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.04 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.03 Archaeplastida
Cre04.g214250 No alias Protein argonaute 1 OS=Arabidopsis thaliana 0.03 Archaeplastida
GSVIVT01029383001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
LOC_Os04g52550.1 No alias Protein argonaute 3 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os06g39640.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
LOC_Os07g16224.1 No alias siRNA-integrating factor (AGO) 0.03 Archaeplastida
MA_10427005g0010 No alias siRNA-binding factor (AGO2) of non-canonical RdDM pathway 0.03 Archaeplastida
MA_10429131g0010 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
MA_158278g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_71066g0010 No alias Protein argonaute 4B OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Smo109987 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Smo232189 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Smo446086 No alias Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
Solyc01g008960.3.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.05 Archaeplastida
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Solyc06g073540.4.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Solyc07g049500.3.1 No alias siRNA-integrating factor (AGO) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR032474 Argonaute_N 238 376
IPR014811 ArgoL1 386 435
IPR032473 Argonaute_Mid_dom 635 713
IPR003165 Piwi 729 1049
IPR003100 PAZ_dom 442 567
IPR024357 Argonaut_Gly-rich 118 219
IPR032472 ArgoL2 578 624
No external refs found!