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  5. Zm00001e029999_P001

Zm00001e029999_P001


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e029999_P001
Cluster HCCA: Cluster_183

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00171p00044290 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.03 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.02 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G54920 PMR6 Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT4G24780 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.02 Archaeplastida
LOC_Os06g05272.1 No alias pectate lyase 0.04 Archaeplastida
LOC_Os06g38510.2 No alias pectate lyase 0.02 Archaeplastida
LOC_Os06g38520.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.06 Archaeplastida
MA_10430145g0030 No alias pectate lyase 0.02 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc09g008380.3.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e030632_P001 No alias pectate lyase 0.04 Archaeplastida
Zm00001e040624_P001 No alias pectate lyase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0030599 pectinesterase activity IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
MF GO:0052689 carboxylic ester hydrolase activity IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
InterPro domains Description Start Stop
IPR002022 Pec_lyase 189 370
IPR007524 Pec_lyase_N 44 88
No external refs found!