Zm00001e030325_P003

Description : transcription factor (ARF)

Gene families : OG0000080 (Archaeplastida) Phylogenetic Tree(s): OG0000080_tree ,
OG_05_0000516 (LandPlants) Phylogenetic Tree(s): OG_05_0000516_tree ,
OG_06_0000730 (SeedPlants) Phylogenetic Tree(s): OG_06_0000730_tree

Sequence : coding (download), protein (download)

Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e030325_P003
Cluster	HCCA: Cluster_357

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00029p00157690	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AMTR_s00211p00025860	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
AT1G19850	MP, IAA24, ARF5	Transcriptional factor B3 family protein /...	0.03	Archaeplastida
AT5G37020	ARF8, ATARF8	auxin response factor 8	0.02	Archaeplastida
AT5G60450	ARF4	auxin response factor 4	0.05	Archaeplastida
GSVIVT01019566001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01020805001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01021552001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.04	Archaeplastida
GSVIVT01025691001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01032251001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.02	Archaeplastida
GSVIVT01035204001	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
GSVIVT01035205001	No alias	Auxin response factor 12 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
Gb_10929	No alias	Auxin response factor 16 OS=Oryza sativa subsp. indica...	0.03	Archaeplastida
Gb_18738	No alias	transcription factor (ARF)	0.02	Archaeplastida
Gb_23186	No alias	transcription factor (ARF)	0.04	Archaeplastida
Gb_23328	No alias	transcription factor (ARF)	0.03	Archaeplastida
Gb_39685	No alias	transcription factor (ARF)	0.05	Archaeplastida
Gb_39686	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os01g13520.1	No alias	transcription factor (ARF)	0.05	Archaeplastida
LOC_Os01g48060.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
LOC_Os04g36054.1	No alias	transcription factor (ARF)	0.08	Archaeplastida
LOC_Os04g56850.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
LOC_Os05g43920.1	No alias	transcription factor (ARF)	0.1	Archaeplastida
LOC_Os05g48870.1	No alias	transcription factor (ARF)	0.06	Archaeplastida
LOC_Os11g32110.1	No alias	transcription factor (ARF)	0.07	Archaeplastida
MA_103763g0010	No alias	Auxin response factor 6 OS=Arabidopsis thaliana...	0.03	Archaeplastida
MA_137387g0010	No alias	no hits & (original description: none)	0.05	Archaeplastida
Mp1g07070.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Mp2g02890.1	No alias	Auxin response factor 19 OS=Oryza sativa subsp. japonica...	0.03	Archaeplastida
Pp3c13_4720V3.1	No alias	auxin response factor 6	0.02	Archaeplastida
Pp3c14_16990V3.1	No alias	auxin response factor 6	0.04	Archaeplastida
Pp3c1_40270V3.1	No alias	auxin response factor 6	0.05	Archaeplastida
Pp3c26_11550V3.1	No alias	auxin response factor 6	0.03	Archaeplastida
Smo117217	No alias	RNA biosynthesis.transcriptional activation.B3...	0.03	Archaeplastida
Solyc01g096070.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g047460.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Solyc05g056040.3.1	No alias	transcription factor (ARF)	0.04	Archaeplastida
Solyc08g082630.3.1	No alias	transcription factor (ARF)	0.03	Archaeplastida
Zm00001e003591_P003	No alias	transcription factor (ARF)	0.04	Archaeplastida
Zm00001e016366_P002	No alias	transcription factor (ARF)	0.07	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IEA	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	IEA	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0005984	disaccharide metabolic process	IEP	Neighborhood
BP	GO:0005991	trehalose metabolic process	IEP	Neighborhood
BP	GO:0005992	trehalose biosynthetic process	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009311	oligosaccharide metabolic process	IEP	Neighborhood
BP	GO:0009312	oligosaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
BP	GO:0046351	disaccharide biosynthetic process	IEP	Neighborhood
MF	GO:0046983	protein dimerization activity	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR033389	AUX/IAA_dom	778	867
IPR003340	B3_DNA-bd	137	238
IPR010525	Auxin_resp	263	346

External Links

No external refs found!

Zm00001e030325_P003

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation