1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT3G46020

AT3G46020


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG0000043 (Archaeplastida) Phylogenetic Tree(s): OG0000043_tree ,
OG_05_0001165 (LandPlants) Phylogenetic Tree(s): OG_05_0001165_tree ,
OG_06_0000918 (SeedPlants) Phylogenetic Tree(s): OG_06_0000918_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G46020
Cluster HCCA: Cluster_53

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00103290 evm_27.TU.AmTr_v1... Organelle RRM domain-containing protein 2, mitochondrial... 0.03 Archaeplastida
AMTR_s00013p00256900 evm_27.TU.AmTr_v1... RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Cre02.g079400 No alias No description available 0.04 Archaeplastida
GSVIVT01025527001 No alias Organelle RRM domain-containing protein 2, mitochondrial... 0.02 Archaeplastida
LOC_Os03g46770.1 No alias RNA chaperone (RZ1|GR-RBP) 0.03 Archaeplastida
Pp3c4_6610V3.1 No alias glycine-rich RNA-binding protein 3 0.02 Archaeplastida
Smo140819 No alias RNA processing.organelle machineries.RNA... 0.04 Archaeplastida
Zm00001e040294_P001 No alias RNA editing factor (ORRM) 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding ISS Interproscan
CC GO:0005575 cellular_component ND Interproscan
BP GO:0008150 biological_process ND Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000002 mitochondrial genome maintenance IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
CC GO:0000792 heterochromatin IEP Neighborhood
CC GO:0005720 nuclear heterochromatin IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005732 small nucleolar ribonucleoprotein complex IEP Neighborhood
CC GO:0005778 peroxisomal membrane IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
MF GO:0008327 methyl-CpG binding IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009432 SOS response IEP Neighborhood
CC GO:0010369 chromocenter IEP Neighborhood
CC GO:0010370 perinucleolar chromocenter IEP Neighborhood
BP GO:0010426 DNA methylation on cytosine within a CHH sequence IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016877 ligase activity, forming carbon-sulfur bonds IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
MF GO:0019948 SUMO activating enzyme activity IEP Neighborhood
BP GO:0022403 cell cycle phase IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
CC GO:0031903 microbody membrane IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032776 DNA methylation on cytosine IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
MF GO:0043621 protein self-association IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044438 microbody part IEP Neighborhood
CC GO:0044439 peroxisomal part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0044848 biological phase IEP Neighborhood
BP GO:0051325 interphase IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
CC GO:0098687 chromosomal region IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 9 78
No external refs found!