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  5. Zm00001e030632_P001

Zm00001e030632_P001


Description : pectate lyase


Gene families : OG0000134 (Archaeplastida) Phylogenetic Tree(s): OG0000134_tree ,
OG_05_0000111 (LandPlants) Phylogenetic Tree(s): OG_05_0000111_tree ,
OG_06_0000097 (SeedPlants) Phylogenetic Tree(s): OG_06_0000097_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030632_P001
Cluster HCCA: Cluster_97

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00078p00106380 evm_27.TU.AmTr_v1... Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
AT1G14420 AT59 Pectate lyase family protein 0.02 Archaeplastida
AT2G02720 No alias Pectate lyase family protein 0.02 Archaeplastida
AT3G01270 No alias Pectate lyase family protein 0.03 Archaeplastida
AT5G15110 No alias Pectate lyase family protein 0.02 Archaeplastida
GSVIVT01020067001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
GSVIVT01020068001 No alias Cell wall.pectin.modification and degradation.pectate lyase 0.02 Archaeplastida
LOC_Os05g22800.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g05272.1 No alias pectate lyase 0.03 Archaeplastida
LOC_Os06g38520.1 No alias Probable pectate lyase 22 OS=Arabidopsis thaliana... 0.04 Archaeplastida
Pp3c10_20140V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Pp3c1_33130V3.1 No alias Pectin lyase-like superfamily protein 0.03 Archaeplastida
Solyc02g067450.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc05g007080.4.1 No alias pectate lyase 0.02 Archaeplastida
Solyc11g008140.3.1 No alias pectate lyase 0.03 Archaeplastida
Zm00001e029999_P001 No alias pectate lyase 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0030570 pectate lyase activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004252 serine-type endopeptidase activity IEP Neighborhood
BP GO:0006820 anion transport IEP Neighborhood
InterPro domains Description Start Stop
IPR007524 Pec_lyase_N 30 82
IPR002022 Pec_lyase 180 344
No external refs found!