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  5. Zm00001e030868_P001

Zm00001e030868_P001


Description : starch synthase (SSII)


Gene families : OG0000161 (Archaeplastida) Phylogenetic Tree(s): OG0000161_tree ,
OG_05_0002981 (LandPlants) Phylogenetic Tree(s): OG_05_0002981_tree ,
OG_06_0003717 (SeedPlants) Phylogenetic Tree(s): OG_06_0003717_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e030868_P001
Cluster HCCA: Cluster_41

Target Alias Description ECC score Gene Family Method Actions
AT1G11720 ATSS3, SS3 starch synthase 3 0.03 Archaeplastida
AT5G24300 SSI1, ATSS1, SSI Glycogen/starch synthases, ADP-glucose type 0.03 Archaeplastida
Cre06.g282000 No alias Carbohydrate metabolism.starch... 0.01 Archaeplastida
Cre16.g665800 No alias Probable starch synthase 4, chloroplastic/amyloplastic... 0.02 Archaeplastida
GSVIVT01011429001 No alias Carbohydrate metabolism.starch... 0.03 Archaeplastida
GSVIVT01019680001 No alias Carbohydrate metabolism.starch... 0.02 Archaeplastida
Gb_31278 No alias starch synthase (SSIV) 0.02 Archaeplastida
LOC_Os05g45720.1 No alias starch synthase (SSIV) 0.01 Archaeplastida
LOC_Os06g04200.3 No alias granule-bound starch (amylose) synthase 0.03 Archaeplastida
LOC_Os06g06560.1 No alias starch synthase (SSI) 0.01 Archaeplastida
LOC_Os06g12450.1 No alias starch synthase (SSII) 0.06 Archaeplastida
LOC_Os08g09230.1 No alias starch synthase (SSIII) 0.06 Archaeplastida
MA_10429460g0020 No alias Granule-bound starch synthase 1,... 0.02 Archaeplastida
MA_482181g0010 No alias Soluble starch synthase 1, chloroplastic/amyloplastic... 0.04 Archaeplastida
Mp1g23640.1 No alias granule-bound starch (amylose) synthase 0.03 Archaeplastida
Mp3g25350.1 No alias starch synthase (SSI) 0.02 Archaeplastida
Pp3c9_14980V3.1 No alias starch synthase 4 0.01 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003852 2-isopropylmalate synthase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004645 phosphorylase activity IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006551 leucine metabolic process IEP Neighborhood
BP GO:0006720 isoprenoid metabolic process IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008184 glycogen phosphorylase activity IEP Neighborhood
BP GO:0008299 isoprenoid biosynthetic process IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009098 leucine biosynthetic process IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0046912 transferase activity, transferring acyl groups, acyl groups converted into alkyl on transfer IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001296 Glyco_trans_1 543 693
IPR013534 Starch_synth_cat_dom 242 484
No external refs found!