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  5. AT3G47180

AT3G47180


Description : RING/U-box superfamily protein


Gene families : OG0000125 (Archaeplastida) Phylogenetic Tree(s): OG0000125_tree ,
OG_05_0001074 (LandPlants) Phylogenetic Tree(s): OG_05_0001074_tree ,
OG_06_0000731 (SeedPlants) Phylogenetic Tree(s): OG_06_0000731_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G47180
Cluster HCCA: Cluster_128

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00016p00244030 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AT1G36950 No alias RING/U-box superfamily protein 0.02 Archaeplastida
AT5G52155 No alias No description available 0.03 Archaeplastida
LOC_Os03g07790.1 No alias E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os09g35690.1 No alias E3 ubiquitin ligase BIG BROTHER OS=Arabidopsis thaliana... 0.02 Archaeplastida
MA_9425979g0010 No alias E3 ubiquitin-protein ligase MBR1 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Solyc12g005510.3.1 No alias no hits & (original description: none) 0.04 Archaeplastida
Solyc12g010500.3.1 No alias no hits & (original description: none) 0.21 Archaeplastida
Zm00001e028021_P003 No alias Probable E3 ubiquitin-protein ligase ZFP1 OS=Oryza... 0.03 Archaeplastida
Zm00001e034749_P001 No alias no hits & (original description: none) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISM Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0001666 response to hypoxia IEP Neighborhood
MF GO:0004630 phospholipase D activity IEP Neighborhood
MF GO:0004816 asparagine-tRNA ligase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
CC GO:0005622 intracellular IEP Neighborhood
BP GO:0005985 sucrose metabolic process IEP Neighborhood
BP GO:0005986 sucrose biosynthetic process IEP Neighborhood
BP GO:0006421 asparaginyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006643 membrane lipid metabolic process IEP Neighborhood
BP GO:0006664 glycolipid metabolic process IEP Neighborhood
MF GO:0008131 primary amine oxidase activity IEP Neighborhood
BP GO:0009247 glycolipid biosynthetic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0009408 response to heat IEP Neighborhood
BP GO:0009736 cytokinin-activated signaling pathway IEP Neighborhood
BP GO:0009820 alkaloid metabolic process IEP Neighborhood
BP GO:0009821 alkaloid biosynthetic process IEP Neighborhood
BP GO:0010383 cell wall polysaccharide metabolic process IEP Neighborhood
BP GO:0010410 hemicellulose metabolic process IEP Neighborhood
BP GO:0010413 glucuronoxylan metabolic process IEP Neighborhood
BP GO:0015988 energy coupled proton transmembrane transport, against electrochemical gradient IEP Neighborhood
BP GO:0015991 ATP hydrolysis coupled proton transport IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016157 sucrose synthase activity IEP Neighborhood
CC GO:0016469 proton-transporting two-sector ATPase complex IEP Neighborhood
MF GO:0016688 L-ascorbate peroxidase activity IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016843 amine-lyase activity IEP Neighborhood
MF GO:0016844 strictosidine synthase activity IEP Neighborhood
BP GO:0019374 galactolipid metabolic process IEP Neighborhood
BP GO:0019375 galactolipid biosynthetic process IEP Neighborhood
BP GO:0033037 polysaccharide localization IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0036293 response to decreased oxygen levels IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0044038 cell wall macromolecule biosynthetic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0045491 xylan metabolic process IEP Neighborhood
BP GO:0045492 xylan biosynthetic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
BP GO:0046466 membrane lipid catabolic process IEP Neighborhood
BP GO:0046467 membrane lipid biosynthetic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0046933 proton-transporting ATP synthase activity, rotational mechanism IEP Neighborhood
BP GO:0052545 callose localization IEP Neighborhood
BP GO:0070482 response to oxygen levels IEP Neighborhood
BP GO:0070589 cellular component macromolecule biosynthetic process IEP Neighborhood
BP GO:0070592 cell wall polysaccharide biosynthetic process IEP Neighborhood
BP GO:0080165 callose deposition in phloem sieve plate IEP Neighborhood
BP GO:0090662 ATP hydrolysis coupled transmembrane transport IEP Neighborhood
BP GO:0099131 ATP hydrolysis coupled ion transmembrane transport IEP Neighborhood
BP GO:0099132 ATP hydrolysis coupled cation transmembrane transport IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
BP GO:1903509 liposaccharide metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR001841 Znf_RING 161 203
No external refs found!