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  5. Zm00001e032163_P001

Zm00001e032163_P001


Description : Pentatricopeptide repeat-containing protein At3g49240, mitochondrial OS=Arabidopsis thaliana (sp|q9m3a8|pp273_arath : 323.0)


Gene families : OG0004773 (Archaeplastida) Phylogenetic Tree(s): OG0004773_tree ,
OG_05_0003293 (LandPlants) Phylogenetic Tree(s): OG_05_0003293_tree ,
OG_06_0001998 (SeedPlants) Phylogenetic Tree(s): OG_06_0001998_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032163_P001
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00099p00081960 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At1g10270... 0.02 Archaeplastida
AT3G49240 emb1796 Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
Gb_33747 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.03 Archaeplastida
Gb_33759 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.1 Archaeplastida
LOC_Os05g30240.1 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.1 Archaeplastida
LOC_Os11g24570.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.1 Archaeplastida
MA_118904g0010 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.04 Archaeplastida
Solyc03g083280.4.1 No alias Pentatricopeptide repeat-containing protein At3g49240,... 0.05 Archaeplastida
Zm00001e004732_P001 No alias Pentatricopeptide repeat-containing protein At1g10270... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 289 316
IPR002885 Pentatricopeptide_repeat 214 241
IPR002885 Pentatricopeptide_repeat 430 477
IPR002885 Pentatricopeptide_repeat 330 372
No external refs found!