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  5. Zm00001e032571_P001

Zm00001e032571_P001


Description : non-proteolytic core component ClpR of chloroplast Clp-type protease complex


Gene families : OG0000861 (Archaeplastida) Phylogenetic Tree(s): OG0000861_tree ,
OG_05_0006945 (LandPlants) Phylogenetic Tree(s): OG_05_0006945_tree ,
OG_06_0008432 (SeedPlants) Phylogenetic Tree(s): OG_06_0008432_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032571_P001
Cluster HCCA: Cluster_39

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00194810 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.05 Archaeplastida
AMTR_s00045p00207040 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
AMTR_s00164p00068000 evm_27.TU.AmTr_v1... Protein degradation.peptidase families.serine-type... 0.06 Archaeplastida
AT1G09130 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.06 Archaeplastida
AT1G49970 CLPR1, SVR2, NCLPP5 CLP protease proteolytic subunit 1 0.06 Archaeplastida
AT4G17040 CLPR4 CLP protease R subunit 4 0.05 Archaeplastida
Cpa|evm.model.tig00020952.49 No alias Protein degradation.peptidase families.serine-type... 0.02 Archaeplastida
Cre03.g204350 No alias Protein degradation.peptidase families.serine-type... 0.02 Archaeplastida
GSVIVT01003696001 No alias Protein degradation.peptidase families.serine-type... 0.07 Archaeplastida
GSVIVT01031146001 No alias Protein degradation.peptidase families.serine-type... 0.07 Archaeplastida
GSVIVT01037850001 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
Gb_12676 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida
Gb_40312 No alias non-proteolytic core component ClpR of chloroplast... 0.09 Archaeplastida
LOC_Os03g22430.1 No alias non-proteolytic core component ClpR of chloroplast... 0.09 Archaeplastida
LOC_Os05g51450.1 No alias non-proteolytic core component ClpR of chloroplast... 0.05 Archaeplastida
MA_10429819g0020 No alias non-proteolytic core component ClpR of chloroplast... 0.04 Archaeplastida
MA_6114g0010 No alias ATP-dependent Clp protease proteolytic subunit-related... 0.03 Archaeplastida
Mp7g03170.1 No alias non-proteolytic core component ClpR of chloroplast... 0.02 Archaeplastida
Pp3c26_8310V3.1 No alias CLP protease R subunit 4 0.03 Archaeplastida
Pp3c3_12000V3.1 No alias ATP-dependent caseinolytic (Clp) protease/crotonase... 0.05 Archaeplastida
Smo153292 No alias Protein degradation.peptidase families.serine-type... 0.04 Archaeplastida
Smo65351 No alias Protein degradation.peptidase families.serine-type... 0.03 Archaeplastida
Solyc01g099690.3.1 No alias non-proteolytic core component ClpR of chloroplast... 0.09 Archaeplastida
Solyc08g077890.3.1 No alias non-proteolytic core component ClpR of chloroplast... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004519 endonuclease activity IEP Neighborhood
MF GO:0004521 endoribonuclease activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
CC GO:0009523 photosystem II IEP Neighborhood
CC GO:0009654 photosystem II oxygen evolving complex IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016226 iron-sulfur cluster assembly IEP Neighborhood
BP GO:0016311 dephosphorylation IEP Neighborhood
MF GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors IEP Neighborhood
MF GO:0016636 oxidoreductase activity, acting on the CH-CH group of donors, iron-sulfur protein as acceptor IEP Neighborhood
MF GO:0016891 endoribonuclease activity, producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0016893 endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019898 extrinsic component of membrane IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031163 metallo-sulfur cluster assembly IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046164 alcohol catabolic process IEP Neighborhood
BP GO:0046174 polyol catabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046838 phosphorylated carbohydrate dephosphorylation IEP Neighborhood
BP GO:0046855 inositol phosphate dephosphorylation IEP Neighborhood
MF GO:0051743 red chlorophyll catabolite reductase activity IEP Neighborhood
BP GO:0071545 inositol phosphate catabolic process IEP Neighborhood
MF GO:0071949 FAD binding IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901616 organic hydroxy compound catabolic process IEP Neighborhood
CC GO:1990204 oxidoreductase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR023562 ClpP/TepA 163 346
No external refs found!