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  5. Zm00001e032595_P001

Zm00001e032595_P001


Description : Pentatricopeptide repeat-containing protein At4g01030, mitochondrial OS=Arabidopsis thaliana (sp|q9sv26|pp297_arath : 574.0)


Gene families : OG0012192 (Archaeplastida) Phylogenetic Tree(s): OG0012192_tree ,
OG_05_0014024 (LandPlants) Phylogenetic Tree(s): OG_05_0014024_tree ,
OG_06_0017965 (SeedPlants) Phylogenetic Tree(s): OG_06_0017965_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032595_P001
Cluster HCCA: Cluster_133

Target Alias Description ECC score Gene Family Method Actions
AT1G19720 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Archaeplastida
Gb_04990 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
Gb_14948 No alias Pentatricopeptide repeat-containing protein At3g57430,... 0.07 Archaeplastida
MA_10243939g0010 No alias Pentatricopeptide repeat-containing protein At1g11290,... 0.03 Archaeplastida
MA_75512g0010 No alias Pentatricopeptide repeat-containing protein At4g13650... 0.03 Archaeplastida
Solyc04g080830.4.1 No alias Pentatricopeptide repeat-containing protein At1g19720... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004853 uroporphyrinogen decarboxylase activity IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
MF GO:0016829 lyase activity IEP Neighborhood
MF GO:0016830 carbon-carbon lyase activity IEP Neighborhood
MF GO:0016831 carboxy-lyase activity IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051188 cofactor biosynthetic process IEP Neighborhood
MF GO:0051536 iron-sulfur cluster binding IEP Neighborhood
MF GO:0051540 metal cluster binding IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR032867 DYW_dom 729 854
IPR002885 Pentatricopeptide_repeat 522 548
IPR002885 Pentatricopeptide_repeat 240 269
IPR002885 Pentatricopeptide_repeat 351 376
IPR002885 Pentatricopeptide_repeat 377 417
IPR002885 Pentatricopeptide_repeat 549 602
IPR002885 Pentatricopeptide_repeat 446 494
IPR002885 Pentatricopeptide_repeat 275 323
No external refs found!