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  5. Zm00001e032965_P005

Zm00001e032965_P005


Description : linker histone (H1)


Gene families : OG0000491 (Archaeplastida) Phylogenetic Tree(s): OG0000491_tree ,
OG_05_0000417 (LandPlants) Phylogenetic Tree(s): OG_05_0000417_tree ,
OG_06_0060347 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e032965_P005
Cluster HCCA: Cluster_69

Target Alias Description ECC score Gene Family Method Actions
AT2G30620 No alias winged-helix DNA-binding transcription factor family protein 0.04 Archaeplastida
Cre13.g567450 No alias Chromatin organisation.histones.H1 linker histone 0.01 Archaeplastida
GSVIVT01036230001 No alias Chromatin organisation.histones.H1 linker histone 0.02 Archaeplastida
Gb_02738 No alias linker histone (H1) 0.01 Archaeplastida
LOC_Os07g08710.1 No alias linker histone (H1) 0.03 Archaeplastida
MA_102457g0010 No alias linker histone (H1) 0.04 Archaeplastida
MA_500183g0010 No alias linker histone (H1) 0.04 Archaeplastida
MA_5293931g0010 No alias No annotation 0.04 Archaeplastida
MA_6021364g0010 No alias linker histone (H1) 0.02 Archaeplastida
MA_6251451g0010 No alias No annotation 0.05 Archaeplastida
Mp6g03150.1 No alias linker histone (H1) 0.01 Archaeplastida
Solyc09g066100.3.1 No alias linker histone (H1) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
BP GO:0006334 nucleosome assembly IEA Interproscan
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR005818 Histone_H1/H5_H15 111 175
No external refs found!