1. Home
  2. Species
  3. Zea mays
  4. Sequence
  5. Zm00001e033165_P001

Zm00001e033165_P001


Description : mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP trafficking complex


Gene families : OG0001027 (Archaeplastida) Phylogenetic Tree(s): OG0001027_tree ,
OG_05_0000803 (LandPlants) Phylogenetic Tree(s): OG_05_0000803_tree ,
OG_06_0017207 (SeedPlants) Phylogenetic Tree(s): OG_06_0017207_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e033165_P001
Cluster HCCA: Cluster_283

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00012p00035940 evm_27.TU.AmTr_v1... RNA processing.messenger ribonucleoprotein particle... 0.03 Archaeplastida
AT5G59950 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000194.40 No alias RNA processing.messenger ribonucleoprotein particle... 0.01 Archaeplastida
GSVIVT01025009001 No alias RNA processing.messenger ribonucleoprotein particle... 0.06 Archaeplastida
Gb_04102 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Gb_18965 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Gb_33262 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.07 Archaeplastida
MA_102122g0010 No alias no hits & (original description: none) 0.04 Archaeplastida
MA_4147g0010 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.05 Archaeplastida
MA_44083g0010 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida
Pp3c25_13340V3.1 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.02 Archaeplastida
Solyc04g014460.4.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 Archaeplastida
Solyc10g086400.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.04 Archaeplastida
Solyc11g073280.2.1 No alias mRNA-binding adaptor component ALY/Tho4 of TREX/THO mRNP... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005956 protein kinase CK2 complex IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0019207 kinase regulator activity IEP Neighborhood
MF GO:0019887 protein kinase regulator activity IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
MF GO:0042393 histone binding IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
InterPro domains Description Start Stop
IPR025715 FoP_C 188 243
IPR000504 RRM_dom 87 153
No external refs found!