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AT3G48950


Description : Pectin lyase-like superfamily protein


Gene families : OG0000349 (Archaeplastida) Phylogenetic Tree(s): OG0000349_tree ,
OG_05_0000329 (LandPlants) Phylogenetic Tree(s): OG_05_0000329_tree ,
OG_06_0002536 (SeedPlants) Phylogenetic Tree(s): OG_06_0002536_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT3G48950
Cluster HCCA: Cluster_112

Target Alias Description ECC score Gene Family Method Actions
LOC_Os05g50960.1 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida
Zm00001e029809_P002 No alias Probable polygalacturonase OS=Vitis vinifera... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISS Interproscan
CC GO:0005576 extracellular region ISM Interproscan
BP GO:0005975 carbohydrate metabolic process ISS Interproscan
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Type GO Term Name Evidence Source
MF GO:0003883 CTP synthase activity IEP Neighborhood
MF GO:0004525 ribonuclease III activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0032296 double-stranded RNA-specific ribonuclease activity IEP Neighborhood
MF GO:0046910 pectinesterase inhibitor activity IEP Neighborhood
InterPro domains Description Start Stop
IPR000743 Glyco_hydro_28 141 424
No external refs found!