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  5. Zm00001e035215_P001

Zm00001e035215_P001


Description : cyclin (CYCD)


Gene families : OG0000252 (Archaeplastida) Phylogenetic Tree(s): OG0000252_tree ,
OG_05_0010948 (LandPlants) Phylogenetic Tree(s): OG_05_0010948_tree ,
OG_06_0010916 (SeedPlants) Phylogenetic Tree(s): OG_06_0010916_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035215_P001
Cluster HCCA: Cluster_13

Target Alias Description ECC score Gene Family Method Actions
AT1G70210 CYCD1;1, ATCYCD1;1 CYCLIN D1;1 0.03 Archaeplastida
AT4G34160 CYCD3, CYCD3;1 CYCLIN D3;1 0.03 Archaeplastida
AT4G37630 CYCD5;1 cyclin d5;1 0.02 Archaeplastida
GSVIVT01003175001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.06 Archaeplastida
GSVIVT01009432001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.07 Archaeplastida
GSVIVT01037810001 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Gb_03361 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os03g42070.1 No alias cyclin (CYCD) 0.03 Archaeplastida
LOC_Os09g02360.1 No alias cyclin (CYCD) 0.04 Archaeplastida
LOC_Os12g39830.1 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_10436212g0010 No alias cyclin (CYCD) 0.03 Archaeplastida
MA_93221g0010 No alias cyclin (CYCD) 0.04 Archaeplastida
Smo15078 No alias Cell cycle.regulation.cyclins.CYCD-type cyclin 0.03 Archaeplastida
Solyc01g107730.3.1 No alias cyclin (CYCD) 0.04 Archaeplastida
Solyc02g092980.3.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc03g006670.4.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc04g076040.3.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Solyc12g088650.2.1 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e000749_P002 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e009441_P003 No alias cyclin (CYCD) 0.04 Archaeplastida
Zm00001e018000_P001 No alias cyclin (CYCD) 0.05 Archaeplastida
Zm00001e033498_P001 No alias cyclin (CYCD) 0.03 Archaeplastida
Zm00001e035575_P002 No alias cyclin (CYCD) 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0042025 host cell nucleus IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004180 carboxypeptidase activity IEP Neighborhood
MF GO:0004185 serine-type carboxypeptidase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008236 serine-type peptidase activity IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017171 serine hydrolase activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
MF GO:0070008 serine-type exopeptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
InterPro domains Description Start Stop
IPR006671 Cyclin_N 54 156
IPR004367 Cyclin_C-dom 160 255
No external refs found!