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  5. Zm00001e035550_P004

Zm00001e035550_P004


Description : subunit 9 of RNA polymerase


Gene families : OG0004058 (Archaeplastida) Phylogenetic Tree(s): OG0004058_tree ,
OG_05_0004152 (LandPlants) Phylogenetic Tree(s): OG_05_0004152_tree ,
OG_06_0005435 (SeedPlants) Phylogenetic Tree(s): OG_06_0005435_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e035550_P004
Cluster HCCA: Cluster_252

Target Alias Description ECC score Gene Family Method Actions
Cpa|evm.model.tig00000970.25 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.03 Archaeplastida
Cre12.g505750 No alias RNA biosynthesis.DNA-dependent RNA polymerase (Pol)... 0.02 Archaeplastida
LOC_Os03g01230.1 No alias subunit 9 of RNA polymerase 0.05 Archaeplastida
LOC_Os07g42395.1 No alias subunit 9 of RNA polymerase 0.04 Archaeplastida
MA_10427302g0010 No alias subunit 9 of RNA polymerase 0.02 Archaeplastida
Pp3c18_17910V3.1 No alias RNA polymerases M/15 Kd subunit 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003712 transcription coregulator activity IEP Neighborhood
MF GO:0003713 transcription coactivator activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
MF GO:0046983 protein dimerization activity IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140110 transcription regulator activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001222 Znf_TFIIS 123 165
IPR001529 DNA-dir_RNA_pol_M/15kDasu 52 84
No external refs found!