Zm00001e036030_P001

Description : U-box domain-containing protein 21 OS=Arabidopsis thaliana (sp|q5pny6|pub21_arath : 151.0)

Gene families : OG0000112 (Archaeplastida) Phylogenetic Tree(s): OG0000112_tree ,
OG_05_0000097 (LandPlants) Phylogenetic Tree(s): OG_05_0000097_tree ,
OG_06_0001043 (SeedPlants) Phylogenetic Tree(s): OG_06_0001043_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Zm00001e036030_P001
Cluster	HCCA: Cluster_273

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00017p00223570	evm_27.TU.AmTr_v1...	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00030p00130440	evm_27.TU.AmTr_v1...	Protein degradation.peptide tagging.Ubiquitin...	0.04	Archaeplastida
AMTR_s00030p00159240	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00043p00215340	evm_27.TU.AmTr_v1...	U-box domain-containing protein 8 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00069p00038840	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.03	Archaeplastida
AMTR_s00138p00053700	evm_27.TU.AmTr_v1...	U-box domain-containing protein 21 OS=Arabidopsis thaliana	0.04	Archaeplastida
AMTR_s00149p00072640	evm_27.TU.AmTr_v1...	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis thaliana	0.03	Archaeplastida
AT1G66160	CMPG1, ATCMPG1	CYS, MET, PRO, and GLY protein 1	0.03	Archaeplastida
AT2G35930	PUB23	plant U-box 23	0.04	Archaeplastida
AT3G02840	No alias	ARM repeat superfamily protein	0.08	Archaeplastida
AT3G11840	PUB24	plant U-box 24	0.02	Archaeplastida
AT3G52450	PUB22	plant U-box 22	0.04	Archaeplastida
AT5G09800	No alias	ARM repeat superfamily protein	0.02	Archaeplastida
AT5G37490	No alias	ARM repeat superfamily protein	0.07	Archaeplastida
AT5G64660	CMPG2, ATCMPG2	CYS, MET, PRO, and GLY protein 2	0.06	Archaeplastida
GSVIVT01011139001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01011140001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana	0.05	Archaeplastida
GSVIVT01011616001	No alias	U-box domain-containing protein 20 OS=Arabidopsis thaliana	0.06	Archaeplastida
GSVIVT01026542001	No alias	U-box domain-containing protein 27 OS=Arabidopsis thaliana	0.02	Archaeplastida
GSVIVT01031720001	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	Archaeplastida
Gb_02627	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.02	Archaeplastida
Gb_02628	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Gb_02629	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.06	Archaeplastida
Gb_02635	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Gb_11650	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.06	Archaeplastida
Gb_13090	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
Gb_16227	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Gb_16228	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Gb_17119	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.03	Archaeplastida
Gb_19502	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
Gb_27794	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.04	Archaeplastida
Gb_29851	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.05	Archaeplastida
Gb_29938	No alias	E3 ubiquitin ligase (PUB)	0.03	Archaeplastida
LOC_Os01g64570.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.08	Archaeplastida
LOC_Os02g33680.1	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.12	Archaeplastida
LOC_Os02g34410.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os02g46500.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
LOC_Os02g50460.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.06	Archaeplastida
LOC_Os03g13740.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.05	Archaeplastida
LOC_Os04g34030.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os04g34140.1	No alias	E3 ubiquitin ligase (PUB)	0.05	Archaeplastida
LOC_Os04g58920.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os06g13870.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.07	Archaeplastida
LOC_Os08g04470.1	No alias	U-box domain-containing protein 8 OS=Arabidopsis...	0.04	Archaeplastida
LOC_Os10g03440.1	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.08	Archaeplastida
MA_10425865g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
MA_10430196g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.02	Archaeplastida
MA_10432813g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.04	Archaeplastida
MA_126399g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_1663g0020	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_17715g0010	No alias	U-box domain-containing protein 20 OS=Arabidopsis...	0.03	Archaeplastida
MA_200041g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.05	Archaeplastida
MA_209202g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.02	Archaeplastida
MA_311559g0010	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.02	Archaeplastida
MA_33190g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
MA_3784951g0010	No alias	no hits & (original description: none)	0.07	Archaeplastida
MA_415344g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
MA_481299g0010	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
MA_52661g0010	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
MA_61761g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
MA_83739g0020	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.05	Archaeplastida
MA_84154g0010	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.08	Archaeplastida
MA_8837995g0010	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.05	Archaeplastida
MA_95662g0020	No alias	U-box domain-containing protein 27 OS=Arabidopsis...	0.03	Archaeplastida
Mp2g06090.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Mp3g01700.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g11730.1	No alias	E3 ubiquitin ligase (PUB)	0.04	Archaeplastida
Mp3g22740.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Mp3g22750.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Mp7g11000.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
Pp3c10_20630V3.1	No alias	plant U-box 22	0.02	Archaeplastida
Pp3c19_3920V3.1	No alias	plant U-box 23	0.02	Archaeplastida
Pp3c24_16470V3.1	No alias	RING/U-box superfamily protein with ARM repeat domain	0.02	Archaeplastida
Smo172230	No alias	U-box domain-containing protein 14 OS=Arabidopsis thaliana	0.03	Archaeplastida
Smo231257	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.02	Archaeplastida
Smo416356	No alias	U-box domain-containing protein 30 OS=Arabidopsis thaliana	0.04	Archaeplastida
Smo426053	No alias	U-box domain-containing protein 26 OS=Arabidopsis thaliana	0.03	Archaeplastida
Solyc01g005160.4.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g007000.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g007010.2.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007020.4.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Solyc01g007030.3.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007040.4.1	No alias	E3 ubiquitin-protein ligase PUB22 OS=Arabidopsis...	0.05	Archaeplastida
Solyc01g007050.3.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.04	Archaeplastida
Solyc01g107980.3.1	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.03	Archaeplastida
Solyc04g008100.3.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.1	Archaeplastida
Solyc04g071030.1.1	No alias	E3 ubiquitin ligase (PUB)	0.1	Archaeplastida
Solyc04g077610.4.1	No alias	U-box domain-containing protein 30 OS=Arabidopsis...	0.02	Archaeplastida
Solyc05g056500.1.1	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.02	Archaeplastida
Solyc06g074140.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.09	Archaeplastida
Solyc11g006030.1.1	No alias	U-box domain-containing protein 21 OS=Arabidopsis...	0.06	Archaeplastida
Solyc11g068920.1.1	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.04	Archaeplastida
Solyc11g068940.1.1	No alias	E3 ubiquitin-protein ligase PUB24 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e007108_P001	No alias	No annotation	0.04	Archaeplastida
Zm00001e007109_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.05	Archaeplastida
Zm00001e008064_P001	No alias	U-box domain-containing protein 27 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e014752_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.06	Archaeplastida
Zm00001e014779_P001	No alias	U-box domain-containing protein 26 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e019173_P001	No alias	E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis...	0.03	Archaeplastida
Zm00001e022679_P001	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e022698_P001	No alias	U-box domain-containing protein 25 OS=Arabidopsis...	0.04	Archaeplastida
Zm00001e040854_P001	No alias	U-box domain-containing protein 29 OS=Arabidopsis...	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006464	cellular protein modification process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044267	cellular protein metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0040008	regulation of growth	IEP	Neighborhood
MF	GO:0043565	sequence-specific DNA binding	IEP	Neighborhood
BP	GO:0045927	positive regulation of growth	IEP	Neighborhood
BP	GO:0048518	positive regulation of biological process	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051259	protein complex oligomerization	IEP	Neighborhood
BP	GO:0051260	protein homooligomerization	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR003613	Ubox_domain	123	194

External Links

No external refs found!

Zm00001e036030_P001

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation