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  5. Zm00001e036242_P002

Zm00001e036242_P002


Description : Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana (sp|q5g1s8|pp241_arath : 1199.0)


Gene families : OG0006433 (Archaeplastida) Phylogenetic Tree(s): OG0006433_tree ,
OG_05_0005096 (LandPlants) Phylogenetic Tree(s): OG_05_0005096_tree ,
OG_06_0005733 (SeedPlants) Phylogenetic Tree(s): OG_06_0005733_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e036242_P002
Cluster HCCA: Cluster_180

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00011p00265800 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g18110,... 0.08 Archaeplastida
AT3G18110 EMB1270 Pentatricopeptide repeat (PPR) superfamily protein 0.1 Archaeplastida
GSVIVT01024457001 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.07 Archaeplastida
Gb_33699 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.02 Archaeplastida
LOC_Os06g09880.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.11 Archaeplastida
MA_712594g0010 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.1 Archaeplastida
Solyc03g096830.4.1 No alias Pentatricopeptide repeat-containing protein At3g18110,... 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0001882 nucleoside binding IEP Neighborhood
MF GO:0001883 purine nucleoside binding IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0004518 nuclease activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0004540 ribonuclease activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005525 GTP binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008270 zinc ion binding IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016788 hydrolase activity, acting on ester bonds IEP Neighborhood
BP GO:0017038 protein import IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019001 guanyl nucleotide binding IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0032549 ribonucleoside binding IEP Neighborhood
MF GO:0032550 purine ribonucleoside binding IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032561 guanyl ribonucleotide binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0034062 5'-3' RNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
MF GO:0043169 cation binding IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
MF GO:0046914 transition metal ion binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0097747 RNA polymerase activity IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
MF GO:2001070 starch binding IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 454 513
IPR002885 Pentatricopeptide_repeat 1022 1071
IPR002885 Pentatricopeptide_repeat 280 339
IPR002885 Pentatricopeptide_repeat 837 894
IPR002885 Pentatricopeptide_repeat 364 394
IPR002885 Pentatricopeptide_repeat 712 741
IPR002885 Pentatricopeptide_repeat 1098 1126
IPR002885 Pentatricopeptide_repeat 782 808
IPR002885 Pentatricopeptide_repeat 221 265
IPR002885 Pentatricopeptide_repeat 396 444
IPR002885 Pentatricopeptide_repeat 957 999
No external refs found!