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  5. Zm00001e037347_P002

Zm00001e037347_P002


Description : RIS-Complex miRNA recruiting factor (AGO1)


Gene families : OG0000124 (Archaeplastida) Phylogenetic Tree(s): OG0000124_tree ,
OG_05_0000677 (LandPlants) Phylogenetic Tree(s): OG_05_0000677_tree ,
OG_06_0000508 (SeedPlants) Phylogenetic Tree(s): OG_06_0000508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037347_P002
Cluster HCCA: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00008p00203090 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.11 Archaeplastida
AMTR_s00008p00203230 evm_27.TU.AmTr_v1... Protein argonaute 16 OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
AMTR_s00044p00049370 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.04 Archaeplastida
AMTR_s00058p00069070 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
AMTR_s00083p00065730 evm_27.TU.AmTr_v1... No description available 0.02 Archaeplastida
AMTR_s00122p00122810 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.06 Archaeplastida
AMTR_s00169p00063850 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.01 Archaeplastida
AT1G48410 AGO1 Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.03 Archaeplastida
AT2G27040 AGO4, OCP11 Argonaute family protein 0.04 Archaeplastida
AT5G43810 PNH, AGO10, ZLL Stabilizer of iron transporter SufD / Polynucleotidyl transferase 0.07 Archaeplastida
GSVIVT01012529001 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
GSVIVT01015464001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01018054001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
GSVIVT01025868001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01030512001 No alias Chromatin organisation.DNA methylation.canonical... 0.02 Archaeplastida
GSVIVT01031430001 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01037488001 No alias Chromatin organisation.DNA methylation.canonical... 0.07 Archaeplastida
LOC_Os02g58490.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.08 Archaeplastida
LOC_Os03g33650.1 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os04g47870.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
LOC_Os04g52550.1 No alias Protein argonaute 3 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os06g39640.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
LOC_Os06g51310.2 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.09 Archaeplastida
MA_10429131g0010 No alias Protein argonaute 1B OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_118377g0010 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
MA_161177g0010 No alias Protein argonaute 7 OS=Oryza sativa subsp. japonica... 0.01 Archaeplastida
Mp1g18110.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
Smo110151 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Smo446086 No alias Chromatin organisation.DNA methylation.canonical... 0.01 Archaeplastida
Solyc01g010970.3.1 No alias Protein argonaute 7 OS=Arabidopsis thaliana... 0.02 Archaeplastida
Solyc03g098280.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.04 Archaeplastida
Solyc06g072300.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.07 Archaeplastida
Solyc07g049500.3.1 No alias siRNA-integrating factor (AGO) 0.04 Archaeplastida
Solyc09g082830.4.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.03 Archaeplastida
Solyc12g006790.3.1 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.01 Archaeplastida
Zm00001e007233_P001 No alias RIS-Complex miRNA recruiting factor (AGO1) 0.02 Archaeplastida
Zm00001e012276_P001 No alias Protein argonaute 12 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003774 motor activity IEP Neighborhood
MF GO:0003777 microtubule motor activity IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003905 alkylbase DNA N-glycosylase activity IEP Neighborhood
MF GO:0004672 protein kinase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005088 Ras guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005089 Rho guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005856 cytoskeleton IEP Neighborhood
BP GO:0006284 base-excision repair IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006644 phospholipid metabolic process IEP Neighborhood
BP GO:0006650 glycerophospholipid metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006887 exocytosis IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007018 microtubule-based movement IEP Neighborhood
MF GO:0008017 microtubule binding IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008289 lipid binding IEP Neighborhood
MF GO:0008725 DNA-3-methyladenine glycosylase activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016301 kinase activity IEP Neighborhood
MF GO:0016307 phosphatidylinositol phosphate kinase activity IEP Neighborhood
BP GO:0016310 phosphorylation IEP Neighborhood
MF GO:0016409 palmitoyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP Neighborhood
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0017048 Rho GTPase binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
MF GO:0019104 DNA N-glycosylase activity IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
MF GO:0043733 DNA-3-methylbase glycosylase activity IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044255 cellular lipid metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044448 cell cortex part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046486 glycerolipid metabolic process IEP Neighborhood
BP GO:0046488 phosphatidylinositol metabolic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0099023 tethering complex IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR003165 Piwi 609 928
IPR014811 ArgoL1 268 317
IPR003100 PAZ_dom 325 450
IPR032473 Argonaute_Mid_dom 517 594
IPR032474 Argonaute_N 124 258
IPR032472 ArgoL2 462 506
No external refs found!