Zm00001e037884_P001


Description : Expansin-B6 OS=Oryza sativa subsp. japonica (sp|q7xca7|expb6_orysj : 328.0)


Gene families : OG0000383 (Archaeplastida) Phylogenetic Tree(s): OG0000383_tree ,
OG_05_0012219 (LandPlants) Phylogenetic Tree(s): OG_05_0012219_tree ,
OG_06_0012328 (SeedPlants) Phylogenetic Tree(s): OG_06_0012328_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e037884_P001
Cluster HCCA: Cluster_174

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00009p00266410 evm_27.TU.AmTr_v1... Cell wall.cell wall proteins.expansins.beta-type expansin 0.05 Archaeplastida
AMTR_s00111p00059150 evm_27.TU.AmTr_v1... Putative expansin-B2 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G65680 ATHEXP BETA 1.4,... expansin B2 0.03 Archaeplastida
AT2G20750 EXPB1, ATEXPB1,... expansin B1 0.05 Archaeplastida
AT2G45110 ATHEXP BETA 1.1,... expansin B4 0.03 Archaeplastida
Gb_19114 No alias beta-like-class expansin 0.04 Archaeplastida
LOC_Os02g42650.1 No alias beta-class expansin 0.04 Archaeplastida
LOC_Os02g44106.1 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os02g44108.1 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os03g01260.1 No alias Expansin-B8 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os03g01270.1 No alias Expansin-B7 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os03g01610.1 No alias Expansin-B1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os03g01640.1 No alias Expansin-B10 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os03g01650.1 No alias Expansin-B1 OS=Oryza sativa subsp. japonica... 0.02 Archaeplastida
LOC_Os04g44780.1 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
LOC_Os04g46630.1 No alias Expansin-B15 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os04g46650.1 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os05g15690.1 No alias Expansin-B18 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os10g40700.1 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
LOC_Os10g40710.1 No alias Expansin-B2 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
LOC_Os10g40720.1 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
LOC_Os10g40730.1 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_10313796g0010 No alias Expansin-B16 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_166764g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
MA_78155g0010 No alias Expansin-B17 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Pp3c17_12970V3.1 No alias expansin B3 0.01 Archaeplastida
Pp3c1_37980V3.1 No alias expansin B3 0.05 Archaeplastida
Pp3c22_630V3.1 No alias expansin B3 0.02 Archaeplastida
Smo171427 No alias Expansin-B17 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Solyc03g093390.4.1 No alias Expansin-B15 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Solyc05g052330.3.1 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Solyc10g008440.3.1 No alias beta-class expansin 0.02 Archaeplastida
Zm00001e000036_P001 No alias Expansin-B4 OS=Oryza sativa subsp. japonica... 0.05 Archaeplastida
Zm00001e015336_P002 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e015337_P001 No alias Expansin-B11 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e023169_P003 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.03 Archaeplastida
Zm00001e036860_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e036907_P001 No alias Putative expansin-B14 OS=Oryza sativa subsp. japonica... 0.06 Archaeplastida
Zm00001e037879_P001 No alias Expansin-B3 OS=Oryza sativa subsp. japonica... 0.07 Archaeplastida
Zm00001e037885_P001 No alias Expansin-B6 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida
Zm00001e041519_P002 No alias Expansin-B5 OS=Oryza sativa subsp. japonica... 0.04 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003824 catalytic activity IEP Neighborhood
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds IEP Neighborhood
MF GO:0004568 chitinase activity IEP Neighborhood
MF GO:0004601 peroxidase activity IEP Neighborhood
MF GO:0004650 polygalacturonase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
BP GO:0006022 aminoglycan metabolic process IEP Neighborhood
BP GO:0006026 aminoglycan catabolic process IEP Neighborhood
BP GO:0006030 chitin metabolic process IEP Neighborhood
BP GO:0006032 chitin catabolic process IEP Neighborhood
BP GO:0006040 amino sugar metabolic process IEP Neighborhood
BP GO:0006417 regulation of translation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006950 response to stress IEP Neighborhood
BP GO:0006979 response to oxidative stress IEP Neighborhood
MF GO:0008146 sulfotransferase activity IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010035 response to inorganic substance IEP Neighborhood
BP GO:0010167 response to nitrate IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0015706 nitrate transport IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0016746 transferase activity, transferring acyl groups IEP Neighborhood
MF GO:0016747 transferase activity, transferring acyl groups other than amino-acyl groups IEP Neighborhood
MF GO:0016782 transferase activity, transferring sulfur-containing groups IEP Neighborhood
MF GO:0016798 hydrolase activity, acting on glycosyl bonds IEP Neighborhood
MF GO:0016799 hydrolase activity, hydrolyzing N-glycosyl compounds IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
BP GO:0017148 negative regulation of translation IEP Neighborhood
MF GO:0020037 heme binding IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
MF GO:0030597 RNA glycosylase activity IEP Neighborhood
MF GO:0030598 rRNA N-glycosylase activity IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032269 negative regulation of cellular protein metabolic process IEP Neighborhood
BP GO:0034248 regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0034249 negative regulation of cellular amide metabolic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0044036 cell wall macromolecule metabolic process IEP Neighborhood
BP GO:0046348 amino sugar catabolic process IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
MF GO:0046906 tetrapyrrole binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050660 flavin adenine dinucleotide binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0050896 response to stimulus IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051248 negative regulation of protein metabolic process IEP Neighborhood
BP GO:0055085 transmembrane transport IEP Neighborhood
BP GO:0055114 oxidation-reduction process IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
MF GO:0140102 catalytic activity, acting on a rRNA IEP Neighborhood
BP GO:1901071 glucosamine-containing compound metabolic process IEP Neighborhood
BP GO:1901072 glucosamine-containing compound catabolic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901698 response to nitrogen compound IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR009009 RlpA-like_DPBB 68 149
IPR007117 Expansin_CBD 161 248
No external refs found!