AT3G53600

Description : C2H2-type zinc finger family protein

Gene families : OG0000103 (Archaeplastida) Phylogenetic Tree(s): OG0000103_tree ,
OG_05_0000039 (LandPlants) Phylogenetic Tree(s): OG_05_0000039_tree ,
OG_06_0000107 (SeedPlants) Phylogenetic Tree(s): OG_06_0000107_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT3G53600
Cluster	HCCA: Cluster_18

Target	Alias	Description	ECC score	Gene Family Method
AT1G27730	ZAT10, STZ	salt tolerance zinc finger	0.03	Archaeplastida
AT2G37430	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT3G46090	ZAT7	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
AT4G35610	No alias	zinc finger (C2H2 type) family protein	0.04	Archaeplastida
AT4G35700	No alias	zinc finger (C2H2 type) family protein	0.03	Archaeplastida
AT5G67450	AZF1, ZF1	zinc-finger protein 1	0.04	Archaeplastida
GSVIVT01023887001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
GSVIVT01037851001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.03	Archaeplastida
Gb_10419	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os01g62130.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os02g44120.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
LOC_Os03g32220.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os03g60570.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os04g08060.1	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
LOC_Os10g40660.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
LOC_Os11g47630.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
MA_167434g0010	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
MA_837209g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_85675g0010	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc04g077980.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc06g074800.1.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Solyc08g078590.1.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc09g008440.1.1	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Solyc12g088400.1.1	No alias	no hits & (original description: none)	0.02	Archaeplastida
Zm00001e001253_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e002344_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e006184_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e019350_P001	No alias	C2H2 zinc finger transcription factor	0.02	Archaeplastida
Zm00001e023172_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e029605_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e038464_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
BP	GO:0002679	respiratory burst involved in defense response	RCA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0035556	intracellular signal transduction	RCA	Interproscan
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045730	respiratory burst	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0004033	aldo-keto reductase (NADP) activity	IEP	Neighborhood
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004601	peroxidase activity	IEP	Neighborhood
MF	GO:0004650	polygalacturonase activity	IEP	Neighborhood
MF	GO:0004737	pyruvate decarboxylase activity	IEP	Neighborhood
MF	GO:0005496	steroid binding	IEP	Neighborhood
BP	GO:0005513	detection of calcium ion	IEP	Neighborhood
MF	GO:0005544	calcium-dependent phospholipid binding	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006857	oligopeptide transport	IEP	Neighborhood
BP	GO:0006863	purine nucleobase transport	IEP	Neighborhood
BP	GO:0006865	amino acid transport	IEP	Neighborhood
BP	GO:0006888	ER to Golgi vesicle-mediated transport	IEP	Neighborhood
MF	GO:0008142	oxysterol binding	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009593	detection of chemical stimulus	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009741	response to brassinosteroid	IEP	Neighborhood
BP	GO:0009828	plant-type cell wall loosening	IEP	Neighborhood
CC	GO:0009986	cell surface	IEP	Neighborhood
MF	GO:0010294	abscisic acid glucosyltransferase activity	IEP	Neighborhood
BP	GO:0010411	xyloglucan metabolic process	IEP	Neighborhood
BP	GO:0010541	acropetal auxin transport	IEP	Neighborhood
BP	GO:0010583	response to cyclopentenone	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
MF	GO:0015105	arsenite transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015700	arsenite transport	IEP	Neighborhood
BP	GO:0015711	organic anion transport	IEP	Neighborhood
BP	GO:0015849	organic acid transport	IEP	Neighborhood
BP	GO:0015851	nucleobase transport	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016209	antioxidant activity	IEP	Neighborhood
MF	GO:0016684	oxidoreductase activity, acting on peroxide as acceptor	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
MF	GO:0032934	sterol binding	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0043090	amino acid import	IEP	Neighborhood
BP	GO:0046942	carboxylic acid transport	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0051592	response to calcium ion	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT3G53600

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation