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  5. Zm00001e038951_P001

Zm00001e038951_P001


Description : Splicing factor U2af large subunit A OS=Nicotiana plumbaginifolia (sp|q9zr39|u2a2a_nicpl : 89.4)


Gene families : OG0000654 (Archaeplastida) Phylogenetic Tree(s): OG0000654_tree ,
OG_05_0005337 (LandPlants) Phylogenetic Tree(s): OG_05_0005337_tree ,
OG_06_0007539 (SeedPlants) Phylogenetic Tree(s): OG_06_0007539_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e038951_P001
Cluster HCCA: Cluster_267

Target Alias Description ECC score Gene Family Method Actions
AT2G33435 No alias RNA-binding (RRM/RBD/RNP motifs) family protein 0.07 Archaeplastida
Cre02.g093975 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.02 Archaeplastida
Cre16.g695450 No alias No description available 0.02 Archaeplastida
GSVIVT01018993001 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.04 Archaeplastida
GSVIVT01027871001 No alias Splicing factor U2af large subunit A OS=Arabidopsis thaliana 0.08 Archaeplastida
Gb_32245 No alias Splicing factor U2af large subunit A OS=Triticum... 0.05 Archaeplastida
LOC_Os03g04520.2 No alias Splicing factor U2af large subunit B OS=Nicotiana... 0.14 Archaeplastida
LOC_Os11g45590.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida
MA_10110465g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_8424039g0010 No alias no hits & (original description: none) 0.03 Archaeplastida
MA_9595064g0010 No alias Splicing factor U2af large subunit B OS=Arabidopsis... 0.03 Archaeplastida
Mp6g18430.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.07 Archaeplastida
Mp6g18910.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Pp3c14_9430V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Archaeplastida
Pp3c25_5610V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Archaeplastida
Pp3c6_9210V3.1 No alias U2 snRNP auxilliary factor, large subunit, splicing factor 0.02 Archaeplastida
Smo160385 No alias RNA processing.RNA splicing.U2-type-intron-specific... 0.07 Archaeplastida
Solyc02g062920.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.04 Archaeplastida
Solyc02g085570.4.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.09 Archaeplastida
Solyc09g090420.4.1 No alias Splicing factor U2af large subunit B OS=Oryza sativa... 0.08 Archaeplastida
Solyc12g008750.3.1 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.06 Archaeplastida
Zm00001e021000_P006 No alias large subunit of U2AF pre-RNA splicing auxiliary factor complex 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000123 histone acetyltransferase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003684 damaged DNA binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004652 polynucleotide adenylyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006357 regulation of transcription by RNA polymerase II IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006476 protein deacetylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016575 histone deacetylation IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031248 protein acetyltransferase complex IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0035601 protein deacylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
CC GO:0070461 SAGA-type complex IEP Neighborhood
MF GO:0070566 adenylyltransferase activity IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
BP GO:0098732 macromolecule deacylation IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1902493 acetyltransferase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000504 RRM_dom 473 545
IPR000504 RRM_dom 580 647
No external refs found!