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  5. Zm00001e039593_P002

Zm00001e039593_P002


Description : co-chaperone (Jjj1)


Gene families : OG0005739 (Archaeplastida) Phylogenetic Tree(s): OG0005739_tree ,
OG_05_0006696 (LandPlants) Phylogenetic Tree(s): OG_05_0006696_tree ,
OG_06_0006042 (SeedPlants) Phylogenetic Tree(s): OG_06_0006042_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039593_P002
Cluster HCCA: Cluster_103

Target Alias Description ECC score Gene Family Method Actions
AT1G74250 No alias DNAJ heat shock N-terminal domain-containing protein 0.03 Archaeplastida
Cpa|evm.model.tig00001487.7 No alias DNAJ protein JJJ1 homolog OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre05.g240650 No alias DNAJ protein JJJ1 homolog OS=Arabidopsis thaliana 0.02 Archaeplastida
LOC_Os12g31840.1 No alias co-chaperone (Jjj1) 0.13 Archaeplastida
Mp7g02220.1 No alias co-chaperone (Jjj1) 0.03 Archaeplastida
Pp3c5_3270V3.1 No alias DNAJ heat shock N-terminal domain-containing protein 0.05 Archaeplastida
Solyc03g115140.4.1 No alias co-chaperone (Jjj1) 0.16 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003674 molecular_function IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003725 double-stranded RNA binding IEP Neighborhood
MF GO:0003729 mRNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
CC GO:0005681 spliceosomal complex IEP Neighborhood
CC GO:0005685 U1 snRNP IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006376 mRNA splice site selection IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0030532 small nuclear ribonucleoprotein complex IEP Neighborhood
CC GO:0033643 host cell part IEP Neighborhood
CC GO:0033646 host intracellular part IEP Neighborhood
CC GO:0033647 host intracellular organelle IEP Neighborhood
CC GO:0033648 host intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0042025 host cell nucleus IEP Neighborhood
CC GO:0044217 other organism part IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
CC GO:0097525 spliceosomal snRNP complex IEP Neighborhood
CC GO:0120114 Sm-like protein family complex IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR022755 Znf_C2H2_jaz 300 325
IPR001623 DnaJ_domain 13 77
No external refs found!