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  5. Zm00001e039986_P003

Zm00001e039986_P003


Description : KH domain-containing protein At4g18375 OS=Arabidopsis thaliana (sp|p58223|y4837_arath : 399.0)


Gene families : OG0000393 (Archaeplastida) Phylogenetic Tree(s): OG0000393_tree ,
OG_05_0010954 (LandPlants) Phylogenetic Tree(s): OG_05_0010954_tree ,
OG_06_0005388 (SeedPlants) Phylogenetic Tree(s): OG_06_0005388_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Zm00001e039986_P003
Cluster HCCA: Cluster_216

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00265700 evm_27.TU.AmTr_v1... RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
AMTR_s00033p00116200 evm_27.TU.AmTr_v1... KH domain-containing protein HEN4 OS=Arabidopsis thaliana 0.04 Archaeplastida
AMTR_s00092p00116010 evm_27.TU.AmTr_v1... KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT5G15270 No alias RNA-binding KH domain-containing protein 0.03 Archaeplastida
GSVIVT01009261001 No alias RNA-binding KH domain-containing protein RCF3... 0.05 Archaeplastida
GSVIVT01011439001 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
GSVIVT01021523001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.06 Archaeplastida
GSVIVT01031037001 No alias KH domain-containing protein At4g18375 OS=Arabidopsis thaliana 0.04 Archaeplastida
GSVIVT01038571001 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Gb_18830 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Gb_31686 No alias RNA-binding KH domain-containing protein RCF3... 0.06 Archaeplastida
Gb_37521 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
Gb_38220 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
LOC_Os06g23460.1 No alias RNA-binding KH domain-containing protein RCF3... 0.07 Archaeplastida
LOC_Os09g32300.1 No alias KH domain-containing protein HEN4 OS=Arabidopsis... 0.05 Archaeplastida
MA_10429211g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.02 Archaeplastida
MA_10430861g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.02 Archaeplastida
MA_108374g0010 No alias KH domain-containing protein HEN4 OS=Arabidopsis... 0.04 Archaeplastida
MA_12604g0010 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
MA_3715g0020 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
MA_6622g0010 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.04 Archaeplastida
Mp3g04880.1 No alias RNA-binding KH domain-containing protein RCF3... 0.04 Archaeplastida
Solyc01g090480.4.1 No alias RNA-binding KH domain-containing protein PEPPER... 0.02 Archaeplastida
Solyc01g106020.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Solyc02g067210.3.1 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.06 Archaeplastida
Solyc03g034200.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.09 Archaeplastida
Solyc04g077060.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.07 Archaeplastida
Solyc05g007810.3.1 No alias RNA-binding KH domain-containing protein RCF3... 0.03 Archaeplastida
Solyc08g048500.3.1 No alias KH domain-containing protein At4g18375 OS=Arabidopsis... 0.08 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
CC GO:0000176 nuclear exosome (RNase complex) IEP Neighborhood
CC GO:0000178 exosome (RNase complex) IEP Neighborhood
BP GO:0000375 RNA splicing, via transesterification reactions IEP Neighborhood
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP Neighborhood
BP GO:0000398 mRNA splicing, via spliceosome IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
MF GO:0005049 nuclear export signal receptor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005634 nucleus IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006397 mRNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016071 mRNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0017069 snRNA binding IEP Neighborhood
MF GO:0017070 U6 snRNA binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030623 U5 snRNA binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
MF GO:0032553 ribonucleotide binding IEP Neighborhood
MF GO:0032555 purine ribonucleotide binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
MF GO:0043167 ion binding IEP Neighborhood
MF GO:0043168 anion binding IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0097367 carbohydrate derivative binding IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
MF GO:0140142 nucleocytoplasmic carrier activity IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1905354 exoribonuclease complex IEP Neighborhood
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 564 626
IPR004088 KH_dom_type_1 396 461
IPR004088 KH_dom_type_1 43 90
IPR004088 KH_dom_type_1 147 211
IPR004088 KH_dom_type_1 315 367
No external refs found!